| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_725-0.7 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER | Bpl_scaf_725 | 9107 | 45338 | + |
| CDS | |||||
| Bpl_scaf_725-0.7 | |||||
| Transcript |
| Bpl_scaf_725-0.7 |
| Protein |
| Bpl_scaf_725-0.7 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00488 | MutS_V | MutS domain V | Domain | Interproscan |
| PF01624 | MutS_I | MutS domain I | Domain | Interproscan |
| PF05188 | MutS_II | MutS domain II | Domain | Interproscan |
| PF05192 | MutS_III | MutS domain III | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000432 | Domain | DNA mismatch repair protein MutS, C-terminal | Interproscan |
| IPR007695 | Domain | DNA mismatch repair protein MutS-like, N-terminal | Interproscan |
| IPR007696 | Domain | DNA mismatch repair protein MutS, core | Interproscan |
| IPR007860 | Domain | DNA mismatch repair protein MutS, connector domain | Interproscan |
| IPR016151 | Homologous_superfamily | DNA mismatch repair protein MutS, N-terminal | Interproscan |
| IPR017261 | Family | DNA mismatch repair protein MutS/MSH | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR036187 | Homologous_superfamily | DNA mismatch repair protein MutS, core domain superfamily | Interproscan |
| IPR036678 | Homologous_superfamily | MutS, connector domain superfamily | Interproscan |
| IPR045076 | Family | DNA mismatch repair MutS family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11361 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003690 | Molecular Function | double-stranded DNA binding | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006298 | Biological Process | mismatch repair | Interproscan |
| GO:0006312 | Biological Process | mitotic recombination | Interproscan |
| GO:0030983 | Molecular Function | mismatched DNA binding | Interproscan |
| GO:0140664 | Molecular Function | ATP-dependent DNA damage sensor activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K08736 | MSH3; DNA mismatch repair protein MSH3 | - | Mismatch repair | ko03430 | PMID: 28812709 |
| Pathways in cancer | ko05200 | PMID: 28812709 | |||
| Colorectal cancer | ko05210 | PMID: 28812709 | |||
| Platinum drug resistance | ko01524 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_725-0.7 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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