Gene detail

Detailed information of Bpl_scaf_7166-0.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_7166-0.5	ATP-DEPENDENT DNA HELICASE	Bpl_scaf_7166	50182	54057	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_7166-0.5

ATGGCACTGACAAATTCGCAAAAAGAAATCCTAAGCAGAGTTTTGGAACAACATTCTTTAGTAGTGTTAGGACAAAGTGGTACAGGTAAAAGCTATTTGATAAAAGAAATAGCTAAACAGCTTAAGAAATGTGGAAAATCTGTGCAAATAACTGCGACTATAGGCATCGCATCGCTTAATATCGATGGGAAAACGATTCATTCGTGGTCAGGAATTGGCGATGGCAGATACACAAATAACACTTTGCTTAATAAGGTGGAAAATAATGAGCATTATCAAGTGTATAAAAACAATATAAAATCCACAGACTGTCTTATAATTGACGAAATATCCATGCTCTCTATGAAATTATTTGAACAGTTAGAATTCGTTTGCAGAAATATTGCCAATAAACACATGCTTTTTGGAGGAATCCAGGTAATTGCTGTGGGCGATTTCTTTCAACTACCCCCTGTACCAGACAATCTAAAACTGGACCCTGCAGAATATTGTTTTAAATCATCTCTGTTTTGCAAGATATTTTGTCATAAATTCATACTGTACGAAGTGATGCGTCAACACCAACCAGATTTTATTAAAGCAATTAACGATGTTGCAAGAGGGGACATGCCTGAAGACACTTTGAATCTCCTGACAAGGTTAAAGCGTCCACTACCCCCAGGCGATGAACCCATACGTTTGTGTGCAAGGAACTTTGATTGTTTTATTTATAATGCATGTAGATTAATGGACTTGGAAGATGATGAAACTGTATACAATGCCATAGATGAAGGTAATGTAACCAAATTGGAAAAAAATCCAGCTCCGAATGAGTTGCATTTAAAAGTTGGGTGTCCTGTAATGTTGTTAAAGAACTTGAGTGAAAAGCTAGTAAATGGACTAAGGGGTACAGTTCAAACTTTAAACAAGGATAGTGTAATTGTTCAGTTTACGAGTATGAACTCTGAACCTCACACAGTGGAATTAAAACCTGAACCATTTACAGTTTTCAGTTCCTTGGATAACAAAGTTATTGCCACAAGACGACAAATTCCTATCTGTCTTGCATTCAGTGTGACCATACACAAGGCGCAAGGCCTTACCTTACAGAGAGTAGAGGTAGATGCAAGTTGCATATTTGCACCGGGACAGCTTGGAGTTGCAATAGGGCGGGCAACAGAAAAAAAAGGGTTACGTCTGATTGGATTTAATAAAACATCAATCCTAAAACATGACAGTAGCCTTTACCAATATTATAATGACAAATATGACAGTAAATTTGACACTGATTTATCGTGCTGTAGAGTATCATTTGATGATATAACTTTTACCAACAATCCTAATCTGTCCATGGTCAGTGATTCACAATTAGAAGAAGATCTATCAGACTTTAGTGATGCAGAAATTGAACAGATAAATGTTATGCTATCTGATGACACTTATATTACGGAAGAGACAGAAATACAAGTACATGTACAAGATAAATTTATTGATATAGCTGACATTTCTGCGATTTTTGTCATTATCGACACTTCAACTACTGAGAAGTCAATTTCTTCGTATTATCAGCAAATTATTGCAACCCAAATGAATGACGTTAAACTTTTTGTAAATAATTTGTATTCTAAAGTTAATGAAATATTTGAAAAAACTTGTGGTGATGTCACTCAAAGGTCAACAGAACCAAAAACTTGGACAAAGTATTATTCTGAATTGTACCAATATTCAATTTCACAGGACTACGTCAGCCTTGTGAAATCCATTTCACACTGTGAACCTTCAAACGTACAATTTGAAATGTGCAGTAAAATATTTGATAAAATAACATCTGTGGTGTTAAAAAAACACAGTGAACATTTAGTAGCCTCTCATGATACTAGTTGTTCATTAACTGAAATGTCAGAAGCTGGCAAAGGAAAACTGCTATATATATTTGGAAGGTGTATTGCCAAATGTAGGTACCACCATATGAAGCATGCCAAAAGTAATATGTACAAAAAGGAAAAAAAGGATTCTGTTGCAAAATCTGTTATGAACGTTAAGATGTTGGATTCCTTGACTAAAACATATTCTGAATTAGAGAACACATCCATGTATAAAGAAACTTTGTTACAAACACAACGAAAACAGAACCTGTCACAAGGTTTAACAAATATCAACGATGCCTCCTTTGAGTTTGTTATGAAAGTGGATAAAAAAAAACTTGCATGTCAACATGAAAAAGCATTTCATCTATATGGATCTGATATTTTGAGTCATTGCCATTCACAACTTTTGAATGATAAGCATTTGTTTGATGAATGGAGAAAGTTATTTCATGATTTTGCCTATGTAGATACTTTTGTTCGAATTGTTAGTGAAACATCTGAACTTTGTTTAAGTGAACTCTATTCAGATCTTATTAACAGATTTTGTAGAATTGCTGATAACCAGTTCAGGAAGGACTTAATTAGTAAAATGAGGAAAACCAAAACTGAACGTCTGAGGAAAAGAGTAGATACTAAACAAAACACTTCATCTGTCTTAACCATGAAAATAATTTTCAATGATAAATCAGAAGCCAAGCAAAGTACCCATTTTAAGTTGAAATCGTATATATTTGATCATGGGAAATCTTGTTTCAGCAGTTTCGTAAAGAATGATTTACTGAAGCTGTGTAAAGCCTACGAAATTGAAGCATCTTCTAGCACTACTAATGATGTTATCAAACAGAAATTATGTTCTATTATACATTCAGCTGATGGAGTTAGTTTCCCAGAATATTTAAATGAAACCACTTCTCAGGCTATAACTGAAACTGATGAAGCAAGACCTAAAATTTCTCATCAGGAGCAACCTGCACGTGCAACATCGTCAGAACAGTCAGTATCATCTTCATCTACTGCTCAAACACATTCATCTGAACCAGCAAAATCATATGTACAAAAGCAGAAAAAGAGGCGAGGTAAAACAAAACTTACCACTAAGTCAAAACAGTGTAAGAAGTCAAAAAGTACAGCACAGTCAAGTAACATGGATGATACTGATACTGTATGTCCATTATGTAAAACAGTTTATACTGAGGGGGAAGATTGGATCGCATGTGACATCTGTGATGCTTGGTACGACAGAAGATGCCTGCAGCTTGATGATCGTCAGTGGGAGGACTTAGAAGGGAATGATTGGTGTCTAGTTTCTAATGTTAATGCTAATTACATGGAAGTTGTAACAGTGACAATGGATAATGCAACATGA

Transcript

Bpl_scaf_7166-0.5

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05970	PIF1	PIF1-like helicase	Family	Interproscan
PF21530	Pif1_2B_dom	DNA helicase Pif1, 2B domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR010285	Family	DNA helicase Pif1-like	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR025662	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049163	Domain	DNA helicase Pif1-like, 2B domain	Interproscan
IPR051055	Family	PIF1 DNA helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47642	ATP-DEPENDENT DNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_7166-0.5 global RNA-seq network