| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_7079-2.14 | RNA 3' TERMINAL PHOSPHATE CYCLASE | Bpl_scaf_7079 | 235131 | 248848 | + |
| CDS | |||||
| Bpl_scaf_7079-2.14 | |||||
| Transcript |
| Bpl_scaf_7079-2.14 |
| Protein |
| Bpl_scaf_7079-2.14 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01137 | RTC | RNA 3'-terminal phosphate cyclase | Domain | Interproscan |
| PF05189 | RTC_insert | RNA 3'-terminal phosphate cyclase (RTC), insert domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000228 | Family | RNA 3'-terminal phosphate cyclase | Interproscan |
| IPR013791 | Domain | RNA 3'-terminal phosphate cyclase, insert domain | Interproscan |
| IPR013792 | Homologous_superfamily | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | Interproscan |
| IPR016443 | Family | RNA 3'-terminal phosphate cyclase type 2 | Interproscan |
| IPR020719 | Conserved_site | RNA 3'-terminal phosphate cyclase-like, conserved site | Interproscan |
| IPR023797 | Domain | RNA 3'-terminal phosphate cyclase domain | Interproscan |
| IPR036553 | Homologous_superfamily | RNA 3'-terminal phosphate cyclase, insert domain superfamily | Interproscan |
| IPR037136 | Homologous_superfamily | RNA 3'-terminal phosphate cyclase domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11096 | RNA 3' TERMINAL PHOSPHATE CYCLASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000479 | Biological Process | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0004521 | Molecular Function | RNA endonuclease activity | Interproscan |
| GO:0005730 | Cellular Component | nucleolus | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| GO:0042254 | Biological Process | ribosome biogenesis | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K11108 | RCL1; RNA 3'-terminal phosphate cyclase-like protein | - | Ribosome biogenesis in eukaryotes | ko03008 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_7079-2.14 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
