| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_7079-2.10 | DNA EXCISION REPAIR PROTEIN ERCC-8 | Bpl_scaf_7079 | 228327 | 234897 | - |
| CDS | |||||
| Bpl_scaf_7079-2.10 | |||||
| Transcript |
| Bpl_scaf_7079-2.10 |
| Protein |
| Bpl_scaf_7079-2.10 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR042238 | Family | DNA excision repair protein Rad28/ERCC8/Ckn1/ATCSA-1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46202 | DNA EXCISION REPAIR PROTEIN ERCC-8 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000109 | Cellular Component | nucleotide-excision repair complex | Interproscan |
| GO:0000209 | Biological Process | protein polyubiquitination | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0006283 | Biological Process | transcription-coupled nucleotide-excision repair | Interproscan |
| GO:0031464 | Cellular Component | Cul4A-RING E3 ubiquitin ligase complex | Interproscan |
| GO:0043161 | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K10570 | ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8 | - | Ubiquitin mediated proteolysis | ko04120 | PMID: 28812709 |
| Nucleotide excision repair | ko03420 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_7079-2.10 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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