Gene detail

Detailed information of Bpl_scaf_681-1.1 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_681-1.1	SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT	Bpl_scaf_681	82317	105042	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_681-1.1

TTTAAAATTGTATCGTAAATTAACATTAAATGGTATTTCTTCAACAAATCACATCAGACAGTTCATAAAAAAAGCGGGATTGTTTTCTTTCTTTTTCCGTTTGTCCTTGAACTTGTTAATTTATTTCAGCAGACGACAAAGTGGAAATCGATCTCGTATACACGAATAAAAAGAACTTCATAAAATCTTTCATTGTGTAAAATGAGCAGAATTTAGAGAGGGATTTTCTTCTTTTATGAAAAATGGCCAGCAACGAACATAATTTTGAGTGCATTTGTGTTTTCTTCTCTTTATTCTGGCGCTTTTTTATGTCACGCGAGAATTTACGATAATGGGAATGGATATAGGGAGTAAAGGAAAGATTGTAAATTGAAAATATTGTTGGTAGACAATTTATTTAAAATTAAAGAATAGTGGTTGAGCCTTTTAAGTGCAAACATTATCAGATAATATAAAGAATGTGAAAGGTATGAATTTATTGATAAAATACAAGCATTTCTGTATGTTTAAAAATTGGATATACTGGTATTTCTTGGGACATATAAAATAACGGAAGAAAGTATGAATAAATTAGTACCAGTATCGGAAACAAGGGAGAAAACCCAGAATCATGGCGAATCTTTTGAGGCAAATTGGAAGACAGAGCATCTTATTGAAGAACAATGGACTTTTTCTACAAAGAAGTGTTCAACCAATGGCTTCATCAACCGCTTATGAAGAAATGAGACAATTTTGGGATAAAAATAGACAACTAAACAGACCACTTTCTCCACATTTGTCAATTTACAAGCCACAGCTAACATCTCTGTTGTCATTATGTCACAGAGTTACAGGCATCATGATGGGTATCACTGTCCCCAGTGTGGCTGCAGCTCTGTTGGTATTACCTGGAGATTTTGAGACTTATATAACAATGATCAGATCGTTGGATATGGGAAATGTAATTATCACAGCAGCTAAATATATCCTGGGATTTCCCGTTATCTATCACTACATCAACGGAATTAGACATTTAGCCTGGGACTGGGCTTTGGGCTTCAGTATGAAGGACACATATAGAACAGGATACTTTGTGTTTGCACTGTCTTGGCTCGTCACAATAGCTGCAGTACATTTTATGTAGAACTGATGAAATTCTGACTAAATTCTTATTGTATTTGCTTAATATCTAACAACTGCATCAGATTTGTGTAGATTTTTATATATTTTACATACTTTTGGAAGGTTTTTACCATCATTAAATTTTAAGAGAGAGAAAAAAAAGTTCCTTATTGTAATACCACTAAAGAAAGATCTTTATCTCCCATATATACATCCAGTATGTATAAATAATATTTTAATGTGTAATTTGCATGTTATTAAAAATTGTTTTTGTTGTCTTGTGCCATTTAATAAAGAATATGTACTAGAAGAAAAGTCTACAAAAAAAGTGTTTATACAAAATTAAATAAAACTTGTGAGTACCTTTAAAATCCTATAGTGTTTACTGTATTATCCTATCTATAATTCTAATTCTAATGCAATATTTACTATTCTACGTAAAATTCTCAATCTGCCATCTTGAAAACCCGAAATCTTAAATGTCATATTTACAACAATACACAAAATTAATTAAAATGACAACACTACAAACATATTTTAGTTAGATTTTATCAAAATTGAAGCGTACACTAGGTAAACTCAAATTGTGACCATAAAACAAACGATTTACGTCCGCAAAGTTTAAAATACTATACAGTTACCTCCTAAAATGACTTCATTGATATAGTCTTTGTAGGTTTATAATGGTATTATAAATAGGAAGACTTACTATTCAGTAAAACACTTGGCCACTCAAGGTTACTTTATGGAATTATTATATTGACAGGAACCTCTTTATTGTGACAAGTTGTTAAAAGAAATAGTGCTTTAATTAAATTATAATATTTTATATTATTTACTACATGTAGATGTTTTATTAGGAATCTTGGATACCCGATTTACAATTTTATTGTTTCATATAACTGCACCTGGAACACATGTAGGTACTGTTTCAACCCAATTTGTATAAACATTAAAGTTTTAGATATTTAAAGATAATTCTTTTTAGCTCACCTTGCCAAAGGCATTGTGAGCTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01127	Sdh_cyt	Succinate dehydrogenase/Fumarate reductase transmembrane subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000701	Family	Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit	Interproscan
IPR014314	Family	Succinate dehydrogenase, cytochrome b556 subunit	Interproscan
IPR018495	Conserved_site	Succinate dehydrogenase, cytochrome b subunit, conserved site	Interproscan
IPR034804	Homologous_superfamily	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10978	SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005749	Cellular Component	obsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006121	Biological Process	mitochondrial electron transport, succinate to ubiquinone	Interproscan
GO:0009055	Molecular Function	electron transfer activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0045281	Cellular Component	obsolete succinate dehydrogenase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00236	SDHC, SDH3; succinate dehydrogenase (ubiquinone) cytochrome b560 subunit	-	Carbon metabolism	ko01200	PMID: 28812709
			Citrate cycle (TCA cycle)	ko00020	PMID: 28812709
			Oxidative phosphorylation	ko00190	PMID: 28812709
			Alzheimer's disease	ko05010	PMID: 28812709
			Parkinson's disease	ko05012	PMID: 28812709
			Huntington's disease	ko05016	PMID: 28812709
			Non-alcoholic fatty liver disease (NAFLD)	ko04932	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_681-1.1 global RNA-seq network