Gene detail

Detailed information of Bpl_scaf_6700-1.15 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_6700-1.15	RNA HELICASE	Bpl_scaf_6700	140809	171969	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_6700-1.15

ATGGATGGACTAGGGGCACTGATTATCTCCCCTACCAGAGAATTGGCATTCCAAACATTTGAAGTTTTAAAGAGAATTGGGAATCGACATGACTTCTCTGCTGGTCTTGTCATTGGTGGAAAGCATTTACGTGAAGAAAAAGAGAGAATTAACAAGACAAATATCGTTGTTTGTACACCAGGAAGACTTCTACAGCACATGGATGAAACCTTCAACTTCTCAGCAGATTCTCTACAAATCCTAGTGCTAGATGAAGCAGACAGAATTCTAGACATGGGATTTGCTCAATCAGTGAATGCCATTGTAGAAAACTTGCCACCAGAAAGACAGACATTACTGTTTAGTGCTACACAAACAAAGTCCGTAAAAGATCTGGCTAGATTAAGTTTATCTGATCCTGTTTATGTATCAGTTCATGAGAATGCTGTTCACAGTACACCCACTCAACTAGAACAGAATTACATTGTATGTGAATTACATGACAAGATGAATCTGTTATGGTCATTTGTAAAGAACCACCTCAAGTGTAAGATCCTGGTGTTCATATCCAGCTGTAAGCAGGTTAGATATATCCATGAATGCTTCAGAAGATTACGTCCTGGTGTTACAGTATTAGGTTTATATGGAACTATGAATCAGTTAAAGCGTGTCGCAGTTTATAATGAGTTCTGTAGGAAGAAACATGCTGTACTCTTTGCTACAGATATAGCTGCTAGAGGGTTAGATTTCCCTGCAGTTAATTGGGTGGTACAAATGGATTGTCCTGAAGATGCTAATACATACATACACAGAGCTGGGAGAACTGCCAGGTATGAGAAAGGTGGAGAAGCCTTACTGTTATTGTTACCATCAGAGGAGGAAGCCATGGTACAACAGCTAAGAAATAAAAAGATACCTATAGAAAATATAAGAATAAATCCTAATAAATTATTTAGTATACAACCCAAACTAGAAAATATCTGTGCTGCTGATCCACATGTTAAAGAAATGGCACAAAGGGCATTTCTAGGTTATCTGAGATCTGTCTTTCTTATGAGTGACAAAAAAGTATTTAATGTTCATAAGCTTAATACAGACGAATATTCAAGATCTTTTGGTTTGGCAATTCCTCCAAAAGTCAGGTTTTTAAAGCGAGAACAGAAAAGATTGGAAGAAAAGGCAGAAAAAATTAAAAAAGAAACTAAAATGAAACAGAAAAATCAAGAACTCGGAAATGAAAATAAAGAAATTACAGAAAGTGAAAGTAGACTTCATCCAGATATCGCATCAGGTTCTGATTCTGATGACAGTGATTCTGAAAATGTTGATTCAGAAGATAATTCAGAAAGTGGACAAAGTGAAAGTGAATCAGATGATGACTCAGAATTGACTAAAAATAAATCAAATCAGGAAGTGTTATTTGACGATGATAATGAAGATGATGATGATTTATTTACTGTAAAACGAGTCGAATTAGAGGATGAATCGGAGGAAGAGGACAAAATTGAAGAGAAAAAGAAAGAAAAACCAGCTACAAAGGCATCACTGGCAAAGAAATTACACAAGAAAAACCTGATAGTTAATACGAAGATTCAGTTTGATGAAGAGGGACAGGTGATAGAAGACAAATTAAAGAAACCAACTGTCAAGAACATGTTTGATGACGATGATGAATATGAAGGTGGCATCAACATACAGGTTGCTAAGCAACGGATGATGGAGGAAGATAAATTTGATAAACAGTTATTTAGAGAAAGAATAAAACAGAAACATAAGGAGGAAAGAATTAAAAAGAAGGAACAAATGAGAGAACAGAAAAAACAAGCAAAGGATGAAGACGATGAAGAAGTTATATTTGAGGGAACAGAAGATACAGATGAAATAATAGCCATGTTACCTGACCCAGACAAAGTGTATGGTAGAAGTGATGATGCCAGTGAAGACGATGATGACGATGAGAATGATGATGATGATGATGACAATGAAGATGAAAGTCCAATGAAGAAGAAATCTAGATTAGATAGTGGTAGCTTTGACGAGTCAGATGATGACGATGATGAAAATTCAGACAATAATAGTGACGATAATGAAACAGGAACTGATTCCTTGGACTAA

Transcript

Bpl_scaf_6700-1.15

GTGTTGGAGTGTTTATATAGAGAGAAATGGAGTCACATGGATGGACTAGGGGCACTGATTATCTCCCCTACCAGAGAATTGGCATTCCAAACATTTGAAGTTTTAAAGAGAATTGGGAATCGACATGACTTCTCTGCTGGTCTTGTCATTGGTGGAAAGCATTTACGTGAAGAAAAAGAGAGAATTAACAAGACAAATATCGTTGTTTGTACACCAGGAAGACTTCTACAGCACATGGATGAAACCTTCAACTTCTCAGCAGATTCTCTACAAATCCTAGTGCTAGATGAAGCAGACAGAATTCTAGACATGGGATTTGCTCAATCAGTGAATGCCATTGTAGAAAACTTGCCACCAGAAAGACAGACATTACTGTTTAGTGCTACACAAACAAAGTCCGTAAAAGATCTGGCTAGATTAAGTTTATCTGATCCTGTTTATGTATCAGTTCATGAGAATGCTGTTCACAGTACACCCACTCAACTAGAACAGAATTACATTGTATGTGAATTACATGACAAGATGAATCTGTTATGGTCATTTGTAAAGAACCACCTCAAGTGTAAGATCCTGGTGTTCATATCCAGCTGTAAGCAGGTTAGATATATCCATGAATGCTTCAGAAGATTACGTCCTGGTGTTACAGTATTAGGTTTATATGGAACTATGAATCAGTTAAAGCGTGTCGCAGTTTATAATGAGTTCTGTAGGAAGAAACATGCTGTACTCTTTGCTACAGATATAGCTGCTAGAGGGTTAGATTTCCCTGCAGTTAATTGGGTGGTACAAATGGATTGTCCTGAAGATGCTAATACATACATACACAGAGCTGGGAGAACTGCCAGGTATGAGAAAGGTGGAGAAGCCTTACTGTTATTGTTACCATCAGAGGAGGAAGCCATGGTACAACAGCTAAGAAATAAAAAGATACCTATAGAAAATATAAGAATAAATCCTAATAAATTATTTAGTATACAACCCAAACTAGAAAATATCTGTGCTGCTGATCCACATGTTAAAGAAATGGCACAAAGGGCATTTCTAGGTTATCTGAGATCTGTCTTTCTTATGAGTGACAAAAAAGTATTTAATGTTCATAAGCTTAATACAGACGAATATTCAAGATCTTTTGGTTTGGCAATTCCTCCAAAAGTCAGGTTTTTAAAGCGAGAACAGAAAAGATTGGAAGAAAAGGCAGAAAAAATTAAAAAAGAAACTAAAATGAAACAGAAAAATCAAGAACTCGGAAATGAAAATAAAGAAATTACAGAAAGTGAAAGTAGACTTCATCCAGATATCGCATCAGGTTCTGATTCTGATGACAGTGATTCTGAAAATGTTGATTCAGAAGATAATTCAGAAAGTGGACAAAGTGAAAGTGAATCAGATGATGACTCAGAATTGACTAAAAATAAATCAAATCAGGAAGTGTTATTTGACGATGATAATGAAGATGATGATGATTTATTTACTGTAAAACGAGTCGAATTAGAGGATGAATCGGAGGAAGAGGACAAAATTGAAGAGAAAAAGAAAGAAAAACCAGCTACAAAGGCATCACTGGCAAAGAAATTACACAAGAAAAACCTGATAGTTAATACGAAGATTCAGTTTGATGAAGAGGGACAGGTGATAGAAGACAAATTAAAGAAACCAACTGTCAAGAACATGTTTGATGACGATGATGAATATGAAGGTGGCATCAACATACAGGTTGCTAAGCAACGGATGATGGAGGAAGATAAATTTGATAAACAGTTATTTAGAGAAAGAATAAAACAGAAACATAAGGAGGAAAGAATTAAAAAGAAGGAACAAATGAGAGAACAGAAAAAACAAGCAAAGGATGAAGACGATGAAGAAGTTATATTTGAGGGAACAGAAGATACAGATGAAATAATAGCCATGTTACCTGACCCAGACAAAGTGTATGGTAGAAGTGATGATGCCAGTGAAGACGATGATGACGATGAGAATGATGATGATGATGATGACAATGAAGATGAAAGTCCAATGAAGAAGAAATCTAGATTAGATAGTGGTAGCTTTGACGAGTCAGATGATGACGATGATGAAAATTCAGACAATAATAGTGACGATAATGAAACAGGAACTGATTCCTTGGACTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF13959	DUF4217	Domain of unknown function (DUF4217)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR025313	Domain	Domain of unknown function DUF4217	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24031	RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14776	DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4	EC:5.6.2.7	Ribosome biogenesis	ko03009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_6700-1.15 global RNA-seq network