| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_6676-1.19 | UV EXCISION REPAIR PROTEIN RAD23 | Bpl_scaf_6676 | 124890 | 146811 | + |
| CDS | |||||
| Bpl_scaf_6676-1.19 | |||||
| Transcript |
| Bpl_scaf_6676-1.19 |
| Protein |
| Bpl_scaf_6676-1.19 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | ULD|UBL|NEDD8 |
| Ubiquitin Family | UBD|Alpha-Helix|UBA |
| Ubiquitin Family | ULD|UFD/UBQ|UBQ_Other |
| Ubiquitin Family | ULD|UFD/UBQ|UBQ_PIM |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00240 | ubiquitin | Ubiquitin family | Domain | Interproscan |
| PF00627 | UBA | UBA/TS-N domain | Domain | Interproscan |
| PF09280 | XPC-binding | XPC-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000626 | Domain | Ubiquitin-like domain | Interproscan |
| IPR004806 | Family | UV excision repair protein Rad23 | Interproscan |
| IPR009060 | Homologous_superfamily | UBA-like superfamily | Interproscan |
| IPR015360 | Domain | XPC-binding domain | Interproscan |
| IPR015940 | Domain | Ubiquitin-associated domain | Interproscan |
| IPR029071 | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR036353 | Homologous_superfamily | XPC-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10621 | UV EXCISION REPAIR PROTEIN RAD23 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003684 | Molecular Function | damaged DNA binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005654 | Cellular Component | nucleoplasm | Interproscan |
| GO:0005829 | Cellular Component | cytosol | Interproscan |
| GO:0006289 | Biological Process | nucleotide-excision repair | Interproscan |
| GO:0031593 | Molecular Function | polyubiquitin modification-dependent protein binding | Interproscan |
| GO:0043130 | Molecular Function | ubiquitin binding | Interproscan |
| GO:0043161 | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0070628 | Molecular Function | proteasome binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K10839 | RAD23, HR23; UV excision repair protein RAD23 | - | Protein processing in endoplasmic reticulum | ko04141 | PMID: 28812709 |
| Nucleotide excision repair | ko03420 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_6676-1.19 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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