Gene detail

Detailed information of Bpl_scaf_65543-0.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_65543-0.3	ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1	Bpl_scaf_65543	522	6251	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_65543-0.3

TACTATTAAACGAGAGATTTATCTAATAACGCACTTTATTAAAAAGAAGTCGCATAGATACAAAAAAGGACAGTAACTTAGGACTTTAAAGATATACAAACGAACGGAAAATGCGTGTTAATATATTGGCTTGGACATATATACTATTTCTCAAGCCCACAGAAAACGTAGTTGTTGATAGCTTTAGACGTTGTTCGCAATTCTTCTTTAAGGCCACCCCACCGTACGGCATGCATAGCCCTCAAACACTGGACTTGTGTCAAGAAGTAGTAAAGAACCCGGGCATGTATTATTATGCTACAAAATATGATTGTTATAAACACATTCCATGGTATAGTGCATATACAATTTCTCTCGGAAAAATTCCACGACAAAAAGGTTGGCATACATCTCCTGAAGTTTCTAAAGAATATAAAATATGTGAACCACAAAATACTAAAGGGACAAGGAAAAGGAAACGAGTACGATATCAAGCAACACATAAAAATTACATTCGTTCTAGATATGAGAGAGGACATTTAAATCCTGCTCAGTATAATACAGCCACTACATTAGCAATGTATTCAACGTTCACCCTTACGAATGCTGCACCTCAAGTTACAAGTTTTAATAGCCCTTTATGGAGAGACTGGGAAACTGGACTTCTTACTCTGGCGGAAGAGAAATGTAATTTTGCAAAGAAAAACATTTTCTTTTTAACTGGAGTTGTCCCTGGTTTAGATTTCATTAAAATCAATAATAAGAATGTCATAAACATCCCATCATTCTTTTGGACGGCAGTGTGTTGTGACTCTTCAGATGCAAAGGATAAAAAAGTAGGATGGTCAGTGGCTGGTGTTGGTATGAACATTGCTAATTCAAAAGCTATAAGGATACTACCCGTTTGGAAAATGAATAAATTCCTGCAAAAGAAAATGCCTGGACCACATGGAAAAGTAGAACTCTTTAAACAGACTAATATTGAAAGAATAATTGATGGGAAAAAAACTAAAGTTGCCATAAGCAACTGTGAATTCAGTAAAAAGAAATCACTGAAAATAAGAAAGAAATTAAAACAAAGAATGGGAAGTTAAACAACAAGCATTTACTGTATGCAGTACGACACATTTGCTTAACGACATTCATTTCACAGAGAGAATTATTTTGATTCTGATATGTATATAAATACCGATGAGAAAAACTGTAATATATGTTTGTGGGCAATGTCGCGCAAATTTATGTGACACAGGTTGGCTCTTCTATCTTTTACCATGCCACTCTCGAGCAGACGACAGTAACACTTACATTGTGCTTGCACATATTTATTAATTTTGTGATATATTGATTATTTTCGGTGAATGTAGATGCTTAGAATCTTAATCGCAGTGCTAATGATTTAATTATGTGATTTTATCACTTGGCTTAATTATGTGGATAACGCATGTGCCAGTGAGAATATACACAGTAATAAATCTCTTGTTTATTTACAAAGAGAAAGACGGGCGTGGTATTGTAAATCTCATGCTTCTGGTATACTTAACGTACGTACTATACACCACCACCGTAATATTATTGTAGTATTATGGGCATCATTTTGCACAGAAATATGATCAATTTATGACGGGGATTAGCAGTATACCGAGCTTCTTTCACTTACTTGCAATATGGCTTTCAGTCGACATAATCATGGTGAGGTATACTCGATGTAACATTATATGATAAAGTTTTGTCAGTGCCTTACAGTGGGTTGGTAATTTTCTCAGAGTACTGGTTTCCGCCACCAATAAAACTGACCGCCACGAATGTTTAGTGGCGCAAAACAGCATGAACTAAGATTACCACCACATGACTTAGTTTTTAACAAATGACTGTATGGGAAAATGGGCGCCATTGTTTTTGAAACAGCAAACCAGATTGAACACAAACTGTACGTAAATACTCCATTAAAACAATGAATGTTTTATGCGAGTCGGAAATTCTAGATGACCTTGATTTTAACAAAGGACCACTAAAAGAAGAGTTTGACGAGGCCAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01223	Endonuclease_NS	DNA/RNA non-specific endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001604	Domain	DNA/RNA non-specific endonuclease	Interproscan
IPR020821	Domain	Extracellular Endonuclease, subunit A	Interproscan
IPR039015	Family	Endonuclease domain-containing 1 protein	Interproscan
IPR044925	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR044929	Homologous_superfamily	DNA/RNA non-specific endonuclease superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21472	ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15049	ENDOD1; endonuclease domain-containing 1 protein	-	Non-coding RNAs	ko03100	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_65543-0.3 global RNA-seq network