Gene detail

Detailed information of Bpl_scaf_65525-1.22 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_65525-1.22	PHENYLALANYL-TRNA SYNTHETASE	Bpl_scaf_65525	133911	145587	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_65525-1.22

ATGCCCAGTGGCCGCTTTGGTAGCCAGATTGGTCTAACTAGAGGAACTGAAAATGCAATCTGGAAGTTCAGGATGAATTTTCCATTTGAAGGACAAACACTACTTGTTGGAGAAGGCGATTTTTCTTTTTCTGTTGCCGTGGTTAATTTCATTCCAATAGAATACAGAAAATATGTGATATCTACCAGCCTTGAGACAGAGGATTCCATCCTGAAGCACAAAACTGCATTAGTACATATTGATAAATTAAAAGAACAAGGTGTGACTGTCTACTTAGAAACAGATGCTACACAAATACATAAGAATCCACTATTGAAGGATATCAGATTTGATAGAATTATCTTCAATTTCCCTCACTCAGGCGGAAAATCAAATCACAAGAAAAATCGGAAGCTCTTGTCTGACTTCTTCTGCAGTGCAGTTCAAAATTTAAATGAAAATGGTCATATCTTGATGACTTTGTGTAAAGGTCAAGGAGGAACTCCAGCAAATCGTCCAATGAGAGCATGGCATGACAGTTGGCAGGTTGTTTCCATGGCAGCAAATGCTGGTCTCATACTGAAAGAAGTGTGGCCATTTGTAGCAACTGATTTCCCAGAGTATGCATGTACTGGATTTAGGAGTCAAGACAAAGGTTTCAACACAGAAGGCGCCATTACACATGTGTTTCATAAAGCTGAGATAGTTAATGTACCAAGGGGAGATAATCCAGTACATGAGTATGTACACAATAGGATAAACAGAAAACTCTTCCAGGAAGAAAATCATCCTATAAAACAGGTCTACAGGAAACTTGAAAATAGCTTGACAAAATGCTTTTGTTTACATCAGTATGACTCCAAACACCCAATTCTTGATAATTATAAAATGAAAGACATGGCCAAAGTATTGAGTCTGTCTGAGCCAACAGGTCCTTATTTTGGAGACAAGTTCTACAAGATTACACAACCAGAACTTTGTGAAATCCAAAAATTGGAAATGACTTCATTACAAGAACATTTGCAAAACAATCTCAGCAATTCATTAGAAGCTTTATCCAATTCAAATACTGATGTCAAGAGTGAAAATTTAACAGATGACTGTGTTAATATTATGACTACTTCCACACCAGGGGAGATAATTCAATCACAGCAGATACATCATCTTAGATTATCTATGTTGGAACATGTGAGATGTCTGTGTGACGAAATTACACACAGTAAGCACGAAGTGAATACACAGAAAGAACAAGCTAGCTGTAACCCATTAACATTAGAAGCAAATTATAAAAATCACACCATGTTCGAAAATTCAAGCAAGATGTCGGTTTTAGAAAGTTGCGAAGGACAGTCTTGTATTACAACATATGCTGATAGCATTCCTTGTTTACATGTCTTGATTGGCCAGGTTTGTAAACCTTGTAGCATCAAGCCAAATACATGCCCAGTAAACATGGAAATGTTGGGTATTATTCAGTTTGAGAATAAAACATGTGACAAGGAAAATATCATCTCTATATGCCAGAAGGTGCATTCTTGTTTTAATGAATGTTTTTCAGAGTTGGAAATAAGCTTAGTTATGAGTGAAGTTCTAAAACCTGACAGTGATCAATCGTCACTAGTTGGTATTTTGAAATTGACTGTAAAAGATTTTGAAAATCGTGAACAAAACACAATAGGTCATATTTGGTTATCAAAAGACAAAATGGAAGATATAAAACCCTGTTTAATATTTGTAGCAGACATTGCTTCTCTCACTGCCAAAGCTTTCAAACTGCCACATATCGAACTTCTATATTTAGAAAATGTTGATTTTTCAAACATTTTTCTTGAAGGAGAAGATAATTCATTCGAATATCGGCCAATTAGTTTATTTCCAGTCTCATTTGAACACGACATGAGCTTCTGGGAGAATGAAACAAAACAATTTGATGAATATATATTTTTTGATGTTATTAGAGGTGTGGCTAAAGATTCAATTATATCAGTTGAGTTGATTGATAGCTACATATGTGAAACTACTGGTAGAAAAAGTCGTTGCTATAGGTTACAGTTTCAATCACATGACAAAGCTTTGTCATATGACACTTCTTGGAAATTACAGAGTATTATTAGGTTAGAAGTGGCTAGAATATTAGAGATAATTTTAAGATAA

Transcript

Bpl_scaf_65525-1.22

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10354	BMT5-like	rRNA (uridine-N3-)-methyltransferase BTM5-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005121	Domain	Ferrodoxin-fold anticodon-binding domain	Interproscan
IPR019446	Domain	25S rRNA (uridine-N(3))-methyltransferase BMT5-like	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR036690	Homologous_superfamily	Ferrodoxin-fold anticodon-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11538	PHENYLALANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0070042	Molecular Function	rRNA (uridine-N3-)-methyltransferase activity	Interproscan
GO:0070475	Biological Process	rRNA base methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_65525-1.22 global RNA-seq network