| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_64998-2.14 | RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG | Bpl_scaf_64998 | 200851 | 211253 | - |
| CDS | |||||
| Bpl_scaf_64998-2.14 | |||||
| Transcript |
| Bpl_scaf_64998-2.14 |
| Protein |
| Bpl_scaf_64998-2.14 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04034 | Ribo_biogen_C | Ribosome biogenesis protein, C-terminal | Domain | Interproscan |
| PF04068 | RLI | Possible Fer4-like domain in RNase L inhibitor, RLI | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007177 | Domain | 16S/18S rRNA aminocarboxypropyltransferase Tsr3, C-terminal | Interproscan |
| IPR007209 | Domain | RNase L inhibitor RLI-like, possible metal-binding domain | Interproscan |
| IPR022968 | Family | 16S/18S rRNA aminocarboxypropyltransferase Tsr3 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR20426 | RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0006364 | Biological Process | rRNA processing | Interproscan |
| GO:0016740 | Molecular Function | transferase activity | Interproscan |
| GO:0030490 | Biological Process | maturation of SSU-rRNA | Interproscan |
| GO:0106388 | Molecular Function | 18S rRNA aminocarboxypropyltransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K09140 | TSR3; rRNA small subunit aminocarboxypropyltransferase | EC:2.5.1.157 | Ribosome biogenesis | ko03009 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_64998-2.14 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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