Gene detail

Detailed information of Bpl_scaf_64925-1.22 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64925-1.22	MIDASIN-RELATED	Bpl_scaf_64925	112970	155338	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_64925-1.22

Transcript

Bpl_scaf_64925-1.22

ATGTGGACCAAGATAAATGTGGAACCCCTCTCTAGAACAGAACTTGAACAGGTGATTACAACAAAATATAGTGATTTAAAACCTGTGTCAGACAGACTACTAGATATTTACTTCATGTTGTCAGCTGGTAAACATGACAACGACGGAAGTGAAGATTCTGTTGGTAAATTCCTGTCACATGATGGCAGACTTATATCTACAAGAGATTTAATGACATGGTGTAAGAGGATATCGAAAGATTTTGACATTTCATCGACAGCTACGGCAAACATCGTTTTACAGGAAGCATTAGATTGTTTTACTTCCTGTTTGTCATCACCGCAGAAGAGACTTCCTGCTGAATATTATTGTAACAAGTACAAGCCTGAGATAAAGATTACACAGAATAGATACACTGTTGGTAGATCAGTACTACAAAGGAATATATCTAACATCACATCTATGACAAGACTCCATGCAACGTTCTCCTTCACAAGAATGTCGTCAGCACTGTTAGAGAAGGTAGCAGTTTGTGTGATGAACAGTGAACCAGTTTTATTAGTTGGAGAAACTGGACACAATTTAAAGGTTGTAAATATGAACCAACAGAGTGATAGTTCTGATCTTCTTGGTGGGTTTAAACCAGTTGATATAAAACATGTTGTTAAGCCATTCCATGAGGACTTTGAAATCTTGTTTTGTAAGATGTCAGCAGATCTGAGCACTAAGTGGAAGGGAATCAAGCATCGTCTACAACAACTGAAGATACAAGTACAACAAACAGAAAATGTCTTAGCTTTCTCATTTATAGAGGGTACATTGGTGAAAGCTTTGAGGAATGGAGATTGGGTCTTGTTAGATGAGATTAATTTAGCAGCAGCTGAAACTTTAGAATGTCTAAGTGGTTTGTTAGAGAGTCAAGCTGGATCATTGATGCTGACTGAACGAGGAGACATAGAACCAGTTGTGAGAAATGAAAACTTTAGATTATTTGCATGTATGAACCCAGCCACAGATGTCGGGAAGAAAGATCTGCCTATTGGAATTCGCAACAGGTATCTATTCATTTACAAATTTTATGTAGATGAATTAGAAGATGTTCAAGATCTGAAGATCCTTGTCAGTGATTACTTGAGAGGTCTTTCTCTTACCTCAGGTCAGATAGAGGGTATTGTCAAGTTTTACTTGGTAGTCAGAGAGGAGGCAGTTAAAAGGTTAACAGATGGAACTGGACATCGTCCGCATTTCAGCACTGATTTATTTCATGAAAATTCCATATTAGAAACCCACTCTTTTCTTTTACAGGGATTTTGTTTAAGTTTCCTCACACAGCTGGACAGATCATCACATCCATTAGTGGAAAGTTTAATATGTCAACACATCCTTGGAAAAACTAACATTAAATCTGTCTTGAAACAACCGATACCTATGCCTGCTAAAGGAAAGTATCTGAACTTTGAGGGATATTGGATATCTACTGGAAGAGTTTTAGTAGAGGCCATGAGAAAGGGGCAGTGGATCATATTAGACGAGTTAAATTTAGCTCCAACAGATGTCCTCGAGGCGCTGAATAGAACCAGAAGGAGAGGATCAGGAGTGTTTGCTGGTAAACATGGATTTATGACATTGAGAGACTTGTTTAGATGGGCTGAAAGATACAAGTGTGAAGAGGCAGGAAAAAATAAGTTTTATGACTGGGAACAACACATGGCTGATCATGTCAGGAAACAAGAAGAAGATCTTGTAGTTCGTGAAGTAATTCAGAAGCATTTCAAACGCAAGGTTGATCCTGATAGATTATTTACACTTAGCAAAAAAACATCATCTACGACTGTTAAGCTACTAGAATCTGTCATTAGCGAATCTCCAGCTAGTTTCCAACATGTGGTATGGACATTTGGGATGAGAAGATTAGCTGTGTTGATCGGACAAGCTATATTGTTTAAGGAGCCTGTCCTTTTAGTTGGTGATACAGGGTGTGGAAAAACAACAATGTGCCAGCTGTTGTCTGCTATAAAGAATTCTAAGTTATACGCCATTAACTGTCATCTACACACAGAAAGTGCTGATTTTCTAGGAGGACTGAGACCTTGTAGAACTCATGATCAGGATGGACCACAAAAACTTTTTGAATGGGTAGATGGACCACTTGTAACTGCTATGAAGGAAGGAGCAATGTTTTTAGTAGATGAAATTTCATTGGCTGATGATTCTGTCCTTGAGAGGTTAAACAGTGTCCTTGAACCTGAACAGATGATTTTATTGGCTGAGAAAGGTGGAGGTGATGGTTCATCCAATGAAGTGGAACAAGTTAATGCCAGTCAGGGATTCCAAGTTTTTGCTACAATGAATCCTGGAGGTGACTTTGGAAAGAAGGAGTTGTCACCAGCACTGAGGAATAGATTTACAGAGATATGATGTACAGTAAGCATCCGTGATATACTTTCTTGGGTGAACTTTATGAACTTAACATCAAAGACTCTCCATGACGATGACTCTGTACAGTACAACAAGTTAGATCCACCATTGGCCTTTATCCATGGTGCTTGCCTCGTCTTCCTAGATGGACTTGGCTCTGGTACCACAAGTCGAGGCTCTGATACTGAAATTGTACAGACAAGATTTATATCACTGGATTTCTTACTAAAACAAGTCAGACAGATGACACATCAGTCATATGATATGAAATCTTTAGGACTACTAGATAAACAAGAAAATGTTGCCTTGGATACTATTACATCTGTGGAGGACAAATTTTGTATTTGGCCTTTTAGTATAGAGAAAGGTGATATTGGTAATAGTCTGGTTGACAACTATGCTTTACAAGCACCGACTACATGTGTCAATGCTCAGAGAATACTAAGATCGTTACAGCTTCCCCGTCCACTCTTACTGGAAGGATCACCTGGCATCGGAAAGACAAGTTTAGTTTTGGCAATAGCCAAAGCAGCTGGGAGACACTTGGTCAGAATCAATCTGTCGGAACAAACAGTAAGTAAAGATAGATATTCAGTATTGGAAGGTTTGAATGCCTGTCTGGATCATAGAGCTGAAGTTTTTATACCAGAACTGAGTAAAACATTCCACATACAACATGAGAAGACACGTCTGTTTGCTTGTCAAAACCCACTTAATCAAGGAGGTGGAAGGAAAGGTTTACCTAGGTCCTTTCTCAACAGGTTTACGCAGGTTTATGTTGAACCATTATCATCTTCAGACCTCCACTTCATAGCTACTACTATGTATCCAGCAATACCACAGGAGATACTGACAACTATGGTGAAATTTAATATAACTAGGACAGTAGACATTAATCCTGGAGAATATGTATCTCTGTTGTACAAAGACAGAATGAGGACAGTTAAAGATAAACAGATGGTGATGAGTCTGTACAGAGAAACTTTCCCTAATGAATTTCCAATCTATGAATCCAGCAAGAAATTCTCCATCAATAGTAGCCATGTACAATGTGGACATTCATTCCTTCCCAGAGTTCAACACCAACAACCAATCAGCAGTCTAGATTCCATTCACCTCCTACATCACTGCTTGGATCCACTAGAATCTATAATGAAATGTGTGGAAATGAACTGGTTGTCTATCATTATTGGACCACAGTCTAGTGGTAAAACAAGCCTAGTTCAACTGTTGGCAACACTGTGTGGACAGAATCTACAAGTGTTGGCTATGAACAGTGCTATGGATACAACAGAATTGTTAGGAGGTTTTGAACAGGTAAATAAAATATATTTTAGAAATTGTACTTCACAGCTTACTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07728	AAA_5	AAA domain (dynein-related subfamily)	Domain	Interproscan
PF17865	AAA_lid_5	Midasin AAA lid domain	Domain	Interproscan
PF17867	AAA_lid_7	Midasin AAA lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR011704	Domain	ATPase, dynein-related, AAA domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR040848	Domain	Midasin, AAA lid domain 7	Interproscan
IPR041190	Domain	Midasin AAA lid domain 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48103	MIDASIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0000055	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030687	Cellular Component	preribosome, large subunit precursor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14572	MDN1, REA1; midasin	-	Ribosome biogenesis in eukaryotes	ko03008	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_64925-1.22 global RNA-seq network