Gene detail

Detailed information of Bpl_scaf_64904-9.40 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64904-9.40	VACUOLAR SORTING PROTEIN 53	Bpl_scaf_64904	948647	976815	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_64904-9.40

TAAAGAGTTATGTCCCCTTCCTTTTACCTTCAGTAAGGGACAGACTGCTGTTAAGTGTAAAGTGGCCGTTGAATATGGCTGCTGTGGATGATGATGACTTGATAGACGAAGAGAGATTAATTTCTTTATTAGAGTTTTCACCTGATGTCCAAGAAGCAATAGATCAGGTATTACCAAGTGAAGACCCCCTAGATAGGGCAGATTTTAATCCAATAGACTATATCAACACATTGTTTCCTACAGAACAATCTTTGGCAAATATTGATGATGTTGTTGGCAAGATACGATATAAAATAAGAGTCAAACAGATACAAGGAGAGTTAGGTACACAGATACAATCTGACTTTGAAGAGGCATTCCAGGGGGCTGGAGCTAAGTATGGTCCAGGAAATCAGAGACAGTTAAAAGAAGCCTGCTTTGTAGTCAGTGTATTGGAGCCCAAAGTTAAGAAGGACCTCCTCAGCTGGTTTGTCAAGTTACAGTTATCAGAATACCTTGTATTGTTTGGAGAAAACCAAGATGTGGCTTGGTTGGACAAGATAGATAGAAGATATGCTTGGATAAAGAGAACTTTGGTAGATTTTGAAGAGAAGTTTGGACATTTATTTCCATCAGATTGGGAAGTTAGTGAGAGAATATGTATAGAGTTTTGTGATTTAACTAGGAAAGAACTATCAAAGATAATGACAAAAAGAAAGGCAGAAATAGATGTCAAGCTGTTGTTATTTGCTATACAAAGGACTACAAACTTTGAAACTTTGTTGGCCAAGAGATTTACAGGTGTTACGTTGCAAGAAATACAGGGAAAGAAATCAGTCAGTGCTGCTCCACAGATTTCAAATCCATTTGAGGGAGAATCTACCAATCCGTTTGAAGGGGACACGGACAACGAAGATGTAAAAACTACCACTGATGATAGCAAGAAATCTTTCGGAGCTGAAGGAACTAGTTCAGCTGCTGGTTTAATACAAAGTATACTGAAAGAAGGGGAGATAACTAAGTTTACTGAAGAGGAGCAATGTAGAATTTGTAGTATACTGTGTACAGCTGAATACTGCATGGAAACAACACAACAGTTAGAGGAGAAACTGAAAGAGAAAGTAGATCCAGATCTAACCAGTCAGATTGACTTAAATCCAGAACAAGATACATTCCATAATGTGATATCAAGCTGTATACAGTTACTAGTTCAAGATTTAGAGACAGCTTGCGAACCTGCATTAACAGCCATGAGTAAGATGTCGTGGTCTTCAGTAGAAGCTGTAGGAGATCAGAGTGGCTATGTCTCAGCTGTCACTACACATCTTAAACAGAACATACCAATAATTAGAGATAATTTAGCTTCATCTAGAAAATTCTTTACTCAGTTTTGTCTTAAATTTGTAAATACATTCATTCCAAAATTCATCAATAACCTGTTTAAGTGTAAATCTATAAACACAGTGGCAGCAGAACAGTTACTGCTGGATACTCATTCATTAAAGACAGTTTTGTTAGATCTTCCATCGTTAGGTTCACAAGTCGTCAGGAAAGCACCTGCCAGTTATACCAAGATAGTAGTGAAGGGTATGACTAAAGCTGAAATGATATTAAAGATTTTGGGGTCAATTAGGTTAAAGGTCCCAAGGTTTTGTTGATAATTTTTATTTTATTATTTCAGGTTGTGATGTCACCCCATGAACAGCCTCAAGGTTTTGTTGATAATTACATCAGATTATTAAGTGATTCAGATATAAATGAATTCCAGAAAGTTCTAGAAATGAAGGTAAGATATATTCTATATATATTTTCTGTTCCCCAAAGAAGCCTTGATATGTAATTCCTACCTCTGCATCACTATTCAGTGTTTGGTTAAGATAGGTTTCACTGTAAGTGATTATCTTTTTTTTACAGAACGGATAATAATTTTATTGCACTAAATTTTGCTGTAAACAATTTACAAGGTATACAGCTTTTACCTAGTATCCCTTGTTGTTAATTACTAAATAGCAAGGGTTTTACTACTCAGCAAAGCTAAGTATCTATAATAAATAATGGAGAGAAAAGAATAGAAGCCTATTGCATATCTGACTTGCAGTCTCCATTATATTCTTTATTTTTTTTTTTCAAAATGAACCCCAAAAAAACCCATGTTCAATGTACATTAGCATTCTGTATGATTGTTGCTCCTGTTATAAATTACTCAAATCTTTTATTCTGTCTTATTGTTTACTCTTAGGTAACAATTAGTACTTTAAAAAAAAGAAGATCTGATTGATAAGGCCAAATAAAAATATATGTGTGGTACCGGTTACATTATTGATTAAAATTTAAAAAAACAGGGTAGGTAGATAGGGATTTTATTTTTATTTTATATATTTTTTTTACATTGATTCTATGGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04100	Vps53_N	Vps53, N-terminal	Repeat	Interproscan
PF16854	VPS53_C	Vacuolar protein sorting-associated protein 53 C-terminus	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007234	Domain	Vps53, N-terminal	Interproscan
IPR031745	Domain	Vps53, C-terminal	Interproscan
IPR039766	Family	Vacuolar protein sorting-associated protein 53	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12820	VACUOLAR SORTING PROTEIN 53	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000938	Cellular Component	GARP complex	Interproscan
GO:0042147	Biological Process	retrograde transport, endosome to Golgi	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_64904-9.40 global RNA-seq network