| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_64764-0.20 | SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1 | Bpl_scaf_64764 | 63070 | 127311 | - |
| CDS | |||||
| Bpl_scaf_64764-0.20 | |||||
| Transcript |
| Bpl_scaf_64764-0.20 |
| Protein |
| Bpl_scaf_64764-0.20 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00533 | BRCT | BRCA1 C Terminus (BRCT) domain | Family | Interproscan |
| PF04193 | PQ-loop | PQ loop repeat | Repeat | Interproscan |
| PF12796 | Ank_2 | Ankyrin repeats (3 copies) | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001357 | Domain | BRCT domain | Interproscan |
| IPR002110 | Repeat | Ankyrin repeat | Interproscan |
| IPR005282 | Family | Lysosomal cystine transporter | Interproscan |
| IPR006603 | Repeat | PQ-loop repeat | Interproscan |
| IPR036420 | Homologous_superfamily | BRCT domain superfamily | Interproscan |
| IPR036770 | Homologous_superfamily | Ankyrin repeat-containing domain superfamily | Interproscan |
| IPR042479 | Family | SMC5-SMC6 complex localization factor protein 1 | Interproscan |
| IPR049936 | Domain | DNA topoisomerase 2-binding protein 1, eighth BRCT domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46677 | SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006974 | Biological Process | DNA damage response | Interproscan |
| GO:0035861 | Cellular Component | site of double-strand break | Interproscan |
| GO:1990166 | Biological Process | protein localization to site of double-strand break | Interproscan |
| GO:2000781 | Biological Process | positive regulation of double-strand break repair | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12386 | CTNS; cystinosin | - | Lysosome | ko04142 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_64764-0.20 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
