Gene detail

Detailed information of Bpl_scaf_64706-0.15 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64706-0.15	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER	Bpl_scaf_64706	26346	55268	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_64706-0.15

ATGAGTGACATTGATCCAAATAAGCTGAAAGTTGCAGAATTGAGAGATGAATTGAAAGCAAGAGGTCTCGACACAAAGGGAACAAAAGCGGTTTTGGCTAAAAGACTTACCAAGGCTTTAAAGGAAGAAAAGGGCGAAACAGTTGGTGATGATTCAACACTAGATGACTCCTCACAAGATATAAGTCATGATGCTAGTCATGCAGATGATAGCTCTCAGGACGTTGGTCATGCAGATGATAGCTCTCAAGACCTTGGTCATACAGATGAAACCTCTCAGGAACTTGGTCAGGAAGATGAAAGTTCTAAGGACATAGCACAAGAACCTGAGGTGACGGCACCAACAGAAGAAGAAAAGCCAACAGAAGAAACACCAATGGTCACTGAAGAAGACAAACCTGAACAAAAGGAAGCAGAGAAAACAGAAGAAGCTATTGAGGTAGACAAACAGAATGGAGATGGTGGCAATATTGAGGAAGAAGTAGCTGGACAAGAATTTGAAACAGTCGATGAAGCTCCATGTGATGAACATGATGAAACAAAACATAGGAGGAAAAGGTCAAGGTCACACGATCGTCACAGAAGTCGATCTAGAGAAAGGAGGAGATCTCGCTCCAGGTCAAAAGAGAGAAGACGCAGCAGAAGCAGATCTCCAAAGAAAGTTGTTATGGAAGATGAAACCTGGGAAACAGCTGAAAATGTTGTTTTAGACAGATTCAACTCAGATTTAAGTTTGAAGATAGATGAAAACAATTTATCAGCACATCCAATGACAGACGATGGATTTGCTATGATGTGGGCTGGTGTTCGTGCTAATTATGGAATCACTAAAGGACAAGTTGGCTATGAAGTCAAGTTGACTGAAAATCTAAATGTTGACCATTTACCAGCAGAAGAGATGACAACACATGTACTTCGTGTGGGATGGTCTGCAGTTAACACATCTATGCAATTAGGAGAAGAACCATTGTCGTATGGTTTTGGTGGAACAGGAAAAGCTTCAACAGATTGTAAATTTATTGATTATGGACAACAGTTCACTGCAGGAGATGTTATCACAGCTTACATAGATTATGAGATGGATGAAAATGAAGTTTACTTCTCTTATGCTAAGAATGGAGATGACCTTGGTGTTTGTTTCCAAGTAGAGAAATCTCAAATAGAAGGACAAGCTATGTTTCCACATATCCTCACAAAGAACACATCATTTGAAGTTAACTTTGGAGCTCAAGAAGAGTCATGGTTTGAAATGAAGGAAGATTTTGTATATGTTGATAAAGTTCCTTTAGAAGAAAGAGTAAGAGGAATACCACCACCAGCAAAAAAAGAAGAGTGTGAGATTATGTGTATGGTTGGTTTGCCTGGTGCAGGAAAGACATATTGGGTCAGTAAACAAGTGGCAGAAAATGCTGACAAGAGATATAATGTTTTGGGAACTAACAATATCATTGATAAAATGAGAGTTATGGGTCTACCCCGTAAGAAGAATTATGCTGGTAGATGGGATGTCTTGATTGATAAATCTACAAAATGTCTGAACAAGCTGTTGGAAATTGGTGCCACCAAAAAGAGAAATTATATTTTAGATCAGACAAATGTGTATGCATCGGCAAGAAGACGTAAAATGCAGCCTTTCGAAGGTTTTCAACGCAAAGCAGTTGTGATTGTACCCAGTGATGAAGAATTCAAAAAGCGCGTTGAGACACGAGAAAAGGAGGAAGGAAAAGATGTCCCTGAAAAAGCTGTACTCGAAATGAAAGCTAATTTTACACTACCAGAGCAAGGAGTTTTATTTGACAGTGTAGAGTTTATAGAACTTGATCAGGAGGAAGCAGCCAAGTTGGTAGAGGAATATGTCAAGGAAGGAAAAGCAGCTCTTCCTCCTCCATCTAAGAAAGGTCGATTTGGTGATCGTCGAGACAGTAGAGATGATAGACGGCATGGTGGAAGAGATAGTTGGAGAGACGACAGACGTGGGGGTGGAAGATGGGGAGGAAACCGAGGAAGCAGTGGATCATGGGGAAATAAAGATGGTGGTCGTGACAGATATGGTGGTGGAAGAGATCGTAGAGATGATCGCAGACGAAGTGGAGGTTACGAAGACCGTCGGGATTGGAAGGGAAGAGACTCTTACAAAAGTGGAGGAAGTTACAACAGTGGTAGACAAGGTTCATGGGGTAACCAAGGAGGGGGACAGTGGGGTAACCAAAGTGGATGGGGAAATCAAAGCAGTTGGGGTGGTAATCAAGGCAACTGGGGAGGAGGAAGTCAGCAGTCTGGATATGGGCAATGGAATTATCAACAAGGAGCAGGGAATCAAGGATATGGAAACTGGGGTCAACAAGGATGGGGGCAGGGACAAGGACAACAGCAAGGCAATTGGGGTTCTGGTTACAATACTGGTTATAATCAGTCGGGGCAGAATTATAACCAAGGAGGAGGCAGCTGGGGAGGAAGCAGCAGTAACTACAGGAAATAA

Transcript

Bpl_scaf_64706-0.15

ATCGTACATGTGCGTCCTTTGGTGGCCATTTGTAATTTCGAGAGGTTTTGGATTAAATGCTCCGTTGGAAAAGTGCATTTTAGTCTACATTAATACTTTCATCACCTCATCAAACATTGCATCTAAATTTAAATCATAACGTTCATTCTGAAATATGAGTGACATTGATCCAAATAAGCTGAAAGTTGCAGAATTGAGAGATGAATTGAAAGCAAGAGGTCTCGACACAAAGGGAACAAAAGCGGTTTTGGCTAAAAGACTTACCAAGGCTTTAAAGGAAGAAAAGGGCGAAACAGTTGGTGATGATTCAACACTAGATGACTCCTCACAAGATATAAGTCATGATGCTAGTCATGCAGATGATAGCTCTCAGGACGTTGGTCATGCAGATGATAGCTCTCAAGACCTTGGTCATACAGATGAAACCTCTCAGGAACTTGGTCAGGAAGATGAAAGTTCTAAGGACATAGCACAAGAACCTGAGGTGACGGCACCAACAGAAGAAGAAAAGCCAACAGAAGAAACACCAATGGTCACTGAAGAAGACAAACCTGAACAAAAGGAAGCAGAGAAAACAGAAGAAGCTATTGAGGTAGACAAACAGAATGGAGATGGTGGCAATATTGAGGAAGAAGTAGCTGGACAAGAATTTGAAACAGTCGATGAAGCTCCATGTGATGAACATGATGAAACAAAACATAGGAGGAAAAGGTCAAGGTCACACGATCGTCACAGAAGTCGATCTAGAGAAAGGAGGAGATCTCGCTCCAGGTCAAAAGAGAGAAGACGCAGCAGAAGCAGATCTCCAAAGAAAGTTGTTATGGAAGATGAAACCTGGGAAACAGCTGAAAATGTTGTTTTAGACAGATTCAACTCAGATTTAAGTTTGAAGATAGATGAAAACAATTTATCAGCACATCCAATGACAGACGATGGATTTGCTATGATGTGGGCTGGTGTTCGTGCTAATTATGGAATCACTAAAGGACAAGTTGGCTATGAAGTCAAGTTGACTGAAAATCTAAATGTTGACCATTTACCAGCAGAAGAGATGACAACACATGTACTTCGTGTGGGATGGTCTGCAGTTAACACATCTATGCAATTAGGAGAAGAACCATTGTCGTATGGTTTTGGTGGAACAGGAAAAGCTTCAACAGATTGTAAATTTATTGATTATGGACAACAGTTCACTGCAGGAGATGTTATCACAGCTTACATAGATTATGAGATGGATGAAAATGAAGTTTACTTCTCTTATGCTAAGAATGGAGATGACCTTGGTGTTTGTTTCCAAGTAGAGAAATCTCAAATAGAAGGACAAGCTATGTTTCCACATATCCTCACAAAGAACACATCATTTGAAGTTAACTTTGGAGCTCAAGAAGAGTCATGGTTTGAAATGAAGGAAGATTTTGTATATGTTGATAAAGTTCCTTTAGAAGAAAGAGTAAGAGGAATACCACCACCAGCAAAAAAAGAAGAGTGTGAGATTATGTGTATGGTTGGTTTGCCTGGTGCAGGAAAGACATATTGGGTCAGTAAACAAGTGGCAGAAAATGCTGACAAGAGATATAATGTTTTGGGAACTAACAATATCATTGATAAAATGAGAGTTATGGGTCTACCCCGTAAGAAGAATTATGCTGGTAGATGGGATGTCTTGATTGATAAATCTACAAAATGTCTGAACAAGCTGTTGGAAATTGGTGCCACCAAAAAGAGAAATTATATTTTAGATCAGACAAATGTGTATGCATCGGCAAGAAGACGTAAAATGCAGCCTTTCGAAGGTTTTCAACGCAAAGCAGTTGTGATTGTACCCAGTGATGAAGAATTCAAAAAGCGCGTTGAGACACGAGAAAAGGAGGAAGGAAAAGATGTCCCTGAAAAAGCTGTACTCGAAATGAAAGCTAATTTTACACTACCAGAGCAAGGAGTTTTATTTGACAGTGTAGAGTTTATAGAACTTGATCAGGAGGAAGCAGCCAAGTTGGTAGAGGAATATGTCAAGGAAGGAAAAGCAGCTCTTCCTCCTCCATCTAAGAAAGGTCGATTTGGTGATCGTCGAGACAGTAGAGATGATAGACGGCATGGTGGAAGAGATAGTTGGAGAGACGACAGACGTGGGGGTGGAAGATGGGGAGGAAACCGAGGAAGCAGTGGATCATGGGGAAATAAAGATGGTGGTCGTGACAGATATGGTGGTGGAAGAGATCGTAGAGATGATCGCAGACGAAGTGGAGGTTACGAAGACCGTCGGGATTGGAAGGGAAGAGACTCTTACAAAAGTGGAGGAAGTTACAACAGTGGTAGACAAGGTTCATGGGGTAACCAAGGAGGGGGACAGTGGGGTAACCAAAGTGGATGGGGAAATCAAAGCAGTTGGGGTGGTAATCAAGGCAACTGGGGAGGAGGAAGTCAGCAGTCTGGATATGGGCAATGGAATTATCAACAAGGAGCAGGGAATCAAGGATATGGAAACTGGGGTCAACAAGGATGGGGGCAGGGACAAGGACAACAGCAAGGCAATTGGGGTTCTGGTTACAATACTGGTTATAATCAGTCGGGGCAGAATTATAACCAAGGAGGAGGCAGCTGGGGAGGAAGCAGCAGTAACTACAGGAAATAAACAATTGTAAATCTTCATCCAGTATCAGGAACTTATAAAAGAAGAACATTTTAGAATCATAATTTGTTGTAAATCTTGTTGACTTCACCAAGGCAAATGGAATTGTTGTATTCATCTTATATAATGGAGGACTTAAATTGACATTGATTCTTGTTAGTAAAATCAATATATTTTATTCAAATTTCATTTATCTTTGACTAGAATAATTTAGTATGAATTATGAAATTTTACTAAATTTTAAATTTTTTTGTCGAATAAATTTTTTACATGTAATTGTCGTAAATCATGGGTGTTTTTATATAAAGGTATTTAGAATAAAGAGAATCATGCTTCATCATCCATTGTAGAATATCATTATTCATTGTCATCTGTTCATTAAATCATTATATAGATCTTTTTGTTTCTATGTTAAATGTAATTTAGAAAAATAAAAGTCCTCCTCTGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02037	SAP	SAP domain	Domain	Interproscan
PF13671	AAA_33	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001870	Domain	B30.2/SPRY domain	Interproscan
IPR003034	Domain	SAP domain	Interproscan
IPR003877	Domain	SPRY domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035778	Domain	Heterogeneous nuclear ribonucleoprotein U, SPRY domain	Interproscan
IPR036361	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12381	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15047	HNRNPUL1, E1BAP5; heterogeneous nuclear ribonucleoprotein U-like protein 1	-	Influenza A	ko05164	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_64706-0.15 global RNA-seq network