Gene detail

Detailed information of Bpl_scaf_64340-1.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64340-1.7	RIBONUCLEASE	Bpl_scaf_64340	133388	164696	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_64340-1.7

ATGATGGTAATAGAAAGAGAAAGTGATCATAATTTGGAAAAAGATAATCGTTACTTACGTTTGAAAAATGTCCAAGGTAAAAGTGTCAGTATTGTACGAGAGGTTTACAGAAGAGAAAACATCCCATGTCAGAGCAGTTTATGTTTGGGAGACTGTAATACAAACATAGGTAACCATGACCATGACCTATTACCTTCTAATGTCACACATTATATCATACCAGACTGTCAGATTGCTAGGGAATATTTGGAAATTTTTGAAGTTCCAGAAATAAATGGAATAATTTTTACACAAACAGCAGAACATAGTGTTCAACATGAAGGGAGTAGAAATCTTCACAATAGGTTAAAAAGGATGGTAAAGGACAAACAGAAAGGTGCTATCATATTTCATAATGAGTTTCAGAAATATGCATATTGTGAACGAGAACCAGGTGAATCTCTGTTGGCATGGCAATCAAGGAGTACATACAAAACTTCTGAATGGTTCTTCAATCATTTGGCTGGACAGTTACCTGTTGTCATGGTTACTAATAATGACAAGATTATAGAGGAGTGTGGAAACAAGACCATTAACATTTTTGTGATGAAATTAGAAGAGTATTTACAAACATTTTGGAAACAAAGCAGTCCATCTTTAATGGAGCTGTATGAGTCATTGACTGTTTCTGTACAAAATAAAAGTAAAAACAGAGGATATAGTGGTTATCTTCCTGTGGAGATTATAGAAGCTGGACTAAAGACTGGAAAGTACATCCAAGGTCATATGAATGTCAACCGTAGTAATGCTTCAGAGGAGGCCTTTGTACGCAGGAAGAGACAAGATTTACAAGAAGATGCTGGTTCAGACATTCTGATATCTGGTATGACCAGTAGGAACAGAGCTGTACATGGAGATTTAGTAGTTATTGAATTGTTACCAAGGTCAGAGTGGAAAGGAAGGTCAAATGTCATCAAAGATACTTCTGAACATTTAGCAGAAACAAAATCGTCAGAGGAAGGAAGCAATAGTGATGTAGAAGACGCAGGGGATATCATGCCAACTGGTTATGTTGTGGGTATTATATCAAGGAATTGGAGAGAATATGTAGCAACATTTGCTGAGGATGAGAAAACAAGCCAGAAAGGAGGGAAAGTTCTTGTAATCCCATGGGATTACAGGATCCCAAAAATTAGGATCAGTACTAGACAAGTGGAACAGCTAAAAGATCATAGAATTATTGTTAGAATAGACTCATGGGAGATTGACTCACAGTATCCCAATGGCCATTTTGTGAGAAGTTTAGGGAAAATTGGTGATTTGGAAACAGAGATTGCAGCCATTTTGATGGAGAACAGTATAAGTGTACCACCTTTCTCTGATGCTCAGAATAAAGAGTTACCTATAGACACAGCTGAACATCCATGGCAAATAGAAGAAACAGAACTGAAGAAGAGACGTGACTTACGTGACAGCCATCTTATCTTCAGTATTGATCCTAAAGGATGTGAAGATGTTGATGATACATTGTCAGTTCGTTGTCTAGAAAATGGAAACATTGAGTTAGGAGTACACATAGCAGACGTAACTCATTTTGTAAAACCAGGGTCTCTGACGGATCAAGAAGCTAGAAGCAGATCGACTACTGTGTACCTGGCAGACAGACGATATGATATGTTACCAAGTATTCTCAGTGCCAACTTATGTTCACTAGTCAGTGGTGTAGATAGGTATGCCGTGAGTGTGATTTGGGAGTTAGATAAAAAGTATGAAGTCATTGATGTATGGTATGGTAAGACAATTATCAGATCCCAGTACAAACTGTTTTATGAGTTAGCTCAGTTAATACATGATGGAGCTTCAAAGGCTGTTGTTGTTGATAATGTACCAGAACTTCAAGATGTATCAGGGGAACTGTTAACCAAAAAAATTGATGAGTTGACTTTAGCTGTTAATCAACTTATGAAAATTGCCAGACATTTAAAGAGTAAGAGGGTCAAAGGAGGGGCATTGGAATTGGAAAGTGTTGAAGTGCAAGTTCAGCTGACAGAGACTAAAAGTGTGGAAGATCTGACTCCAAAAGATCATATGGAAATACATGACACTATAGCAGAATGCATGATATTTGCTAACCATTGGGTTGCCAAAAAGATAACAGAAACATTTTCACAGTGTGCTTTGTTAAGACATCATCCGCTGCCTAGAGATGACCAGTTTGGAAGTTTAAAAAGTTGTGCTGAAGTCAAAGGATTTTCAGTTGATTTCAAATCTAATAAAGCATTAGCAGAATCGTTAGATAAATGTGTTGACCAATCAGATTCTGTTGTGAATAAGCTACTGAGAACCTTAGCAACACTGGCAATGTCTAATGCATCATATTTCTCCACTGGAAGTTTGTCATGTGATCAGTTCTTCCATTACGGTTTGGCATTAGACCTGTATACACACTTTACATCACCAATTAGAAGATATGCAGATGTTATAGTTCACAGACAACTAATGGCAGCTGTTGATGCAGCTGACAGACTAGGGTTACCAGGCAACAAAGAGTTGAATGAAATGTGTGATCACATCAACCAAAAACACAGGTCATCTCAGAATGTTCAGAGAGATTCCCAGGAACTTTTCCAGTGCTTATACTTCAAAGGCAAAGATAAGAATGATGACTGCTGTATAGTTGATGCAGTCATTTACCAACTTAGGAATAATGGAGTGTTTGTTTTTGTCCCGAGATATGGAATCAAAGGTTCAGTATATGTGAGAAGTAAGGATGGTCAAGTGATATATGTACAGACTGGTTTTGAACCTGAATGGACAGGGGGCACCATACAAAGAACAGATCATTCTATAATTGTTAATAATATGTTTGGAACACAGACGTATACTCTTCTTGATCATATAACGGTGAGAATATCTTTAAATGATTCTAGAGCTCACGCACAATCACTTAAACTAGAACTGTTGTGTAATGCACCACATGCAAGTACATTAGGACGTCAGGAACAAGGAGGTGATGTTGCCAAGCAACAGAAAGCAGCTATAATTAAAGTAAGCAGTGAGTTAGAACTATTGAAGATTTGTAGAAAATTGAATGCAACTGTTATTCCATAA

Transcript

Bpl_scaf_64340-1.7

CTCCAGACAAACTTTGCGGGAACATAAACAAACTTAAAATTATTTTTCAAAACCATAATGCACTGTCAAAACCAAATACTGATTATTAGATAAAAGATATTTATGATGCTATGTTAAAAGCACTACTTTCATGATGGTAATAGAAAGAGAAAGTGATCATAATTTGGAAAAAGATAATCGTTACTTACGTTTGAAAAATGTCCAAGGTAAAAGTGTCAGTATTGTACGAGAGGTTTACAGAAGAGAAAACATCCCATGTCAGAGCAGTTTATGTTTGGGAGACTGTAATACAAACATAGGTAACCATGACCATGACCTATTACCTTCTAATGTCACACATTATATCATACCAGACTGTCAGATTGCTAGGGAATATTTGGAAATTTTTGAAGTTCCAGAAATAAATGGAATAATTTTTACACAAACAGCAGAACATAGTGTTCAACATGAAGGGAGTAGAAATCTTCACAATAGGTTAAAAAGGATGGTAAAGGACAAACAGAAAGGTGCTATCATATTTCATAATGAGTTTCAGAAATATGCATATTGTGAACGAGAACCAGGTGAATCTCTGTTGGCATGGCAATCAAGGAGTACATACAAAACTTCTGAATGGTTCTTCAATCATTTGGCTGGACAGTTACCTGTTGTCATGGTTACTAATAATGACAAGATTATAGAGGAGTGTGGAAACAAGACCATTAACATTTTTGTGATGAAATTAGAAGAGTATTTACAAACATTTTGGAAACAAAGCAGTCCATCTTTAATGGAGCTGTATGAGTCATTGACTGTTTCTGTACAAAATAAAAGTAAAAACAGAGGATATAGTGGTTATCTTCCTGTGGAGATTATAGAAGCTGGACTAAAGACTGGAAAGTACATCCAAGGTCATATGAATGTCAACCGTAGTAATGCTTCAGAGGAGGCCTTTGTACGCAGGAAGAGACAAGATTTACAAGAAGATGCTGGTTCAGACATTCTGATATCTGGTATGACCAGTAGGAACAGAGCTGTACATGGAGATTTAGTAGTTATTGAATTGTTACCAAGGTCAGAGTGGAAAGGAAGGTCAAATGTCATCAAAGATACTTCTGAACATTTAGCAGAAACAAAATCGTCAGAGGAAGGAAGCAATAGTGATGTAGAAGACGCAGGGGATATCATGCCAACTGGTTATGTTGTGGGTATTATATCAAGGAATTGGAGAGAATATGTAGCAACATTTGCTGAGGATGAGAAAACAAGCCAGAAAGGAGGGAAAGTTCTTGTAATCCCATGGGATTACAGGATCCCAAAAATTAGGATCAGTACTAGACAAGTGGAACAGCTAAAAGATCATAGAATTATTGTTAGAATAGACTCATGGGAGATTGACTCACAGTATCCCAATGGCCATTTTGTGAGAAGTTTAGGGAAAATTGGTGATTTGGAAACAGAGATTGCAGCCATTTTGATGGAGAACAGTATAAGTGTACCACCTTTCTCTGATGCTCAGAATAAAGAGTTACCTATAGACACAGCTGAACATCCATGGCAAATAGAAGAAACAGAACTGAAGAAGAGACGTGACTTACGTGACAGCCATCTTATCTTCAGTATTGATCCTAAAGGATGTGAAGATGTTGATGATACATTGTCAGTTCGTTGTCTAGAAAATGGAAACATTGAGTTAGGAGTACACATAGCAGACGTAACTCATTTTGTAAAACCAGGGTCTCTGACGGATCAAGAAGCTAGAAGCAGATCGACTACTGTGTACCTGGCAGACAGACGATATGATATGTTACCAAGTATTCTCAGTGCCAACTTATGTTCACTAGTCAGTGGTGTAGATAGGTATGCCGTGAGTGTGATTTGGGAGTTAGATAAAAAGTATGAAGTCATTGATGTATGGTATGGTAAGACAATTATCAGATCCCAGTACAAACTGTTTTATGAGTTAGCTCAGTTAATACATGATGGAGCTTCAAAGGCTGTTGTTGTTGATAATGTACCAGAACTTCAAGATGTATCAGGGGAACTGTTAACCAAAAAAATTGATGAGTTGACTTTAGCTGTTAATCAACTTATGAAAATTGCCAGACATTTAAAGAGTAAGAGGGTCAAAGGAGGGGCATTGGAATTGGAAAGTGTTGAAGTGCAAGTTCAGCTGACAGAGACTAAAAGTGTGGAAGATCTGACTCCAAAAGATCATATGGAAATACATGACACTATAGCAGAATGCATGATATTTGCTAACCATTGGGTTGCCAAAAAGATAACAGAAACATTTTCACAGTGTGCTTTGTTAAGACATCATCCGCTGCCTAGAGATGACCAGTTTGGAAGTTTAAAAAGTTGTGCTGAAGTCAAAGGATTTTCAGTTGATTTCAAATCTAATAAAGCATTAGCAGAATCGTTAGATAAATGTGTTGACCAATCAGATTCTGTTGTGAATAAGCTACTGAGAACCTTAGCAACACTGGCAATGTCTAATGCATCATATTTCTCCACTGGAAGTTTGTCATGTGATCAGTTCTTCCATTACGGTTTGGCATTAGACCTGTATACACACTTTACATCACCAATTAGAAGATATGCAGATGTTATAGTTCACAGACAACTAATGGCAGCTGTTGATGCAGCTGACAGACTAGGGTTACCAGGCAACAAAGAGTTGAATGAAATGTGTGATCACATCAACCAAAAACACAGGTCATCTCAGAATGTTCAGAGAGATTCCCAGGAACTTTTCCAGTGCTTATACTTCAAAGGCAAAGATAAGAATGATGACTGCTGTATAGTTGATGCAGTCATTTACCAACTTAGGAATAATGGAGTGTTTGTTTTTGTCCCGAGATATGGAATCAAAGGTTCAGTATATGTGAGAAGTAAGGATGGTCAAGTGATATATGTACAGACTGGTTTTGAACCTGAATGGACAGGGGGCACCATACAAAGAACAGATCATTCTATAATTGTTAATAATATGTTTGGAACACAGACGTATACTCTTCTTGATCATATAACGGTGAGAATATCTTTAAATGATTCTAGAGCTCACGCACAATCACTTAAACTAGAACTGTTGTGTAATGCACCACATGCAAGTACATTAGGACGTCAGGAACAAGGAGGTGATGTTGCCAAGCAACAGAAAGCAGCTATAATTAAAGTAAGCAGTGAGTTAGAACTATTGAAGATTTGTAGAAAATTGAATGCAACTGTTATTCCATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00773	RNB	RNB domain	Domain	Interproscan
PF17216	Rrp44_CSD1	Rrp44-like cold shock domain	Domain	Interproscan
PF17849	OB_Dis3	Dis3-like cold-shock domain 2 (CSD2)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001900	Domain	Ribonuclease II/R	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR022966	Conserved_site	Ribonuclease II/R, conserved site	Interproscan
IPR033771	Domain	Rrp44-like cold shock domain	Interproscan
IPR041505	Domain	Dis3-like cold-shock domain 2	Interproscan
IPR050180	Family	RNR Ribonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23355	RIBONUCLEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000177	Cellular Component	cytoplasmic exosome (RNase complex)	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004540	Molecular Function	RNA nuclease activity	Interproscan
GO:0016075	Biological Process	rRNA catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18681	DIS3L; DIS3-like exonuclease 1	EC:3.1.13.-	RNA degradation	ko03018	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_64340-1.7 global RNA-seq network