Gene detail

Detailed information of Bpl_scaf_64310-3.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64310-3.3	ZINC FINGER HOMEOBOX PROTEIN	Bpl_scaf_64310	288183	291173	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_64310-3.3

ATGGACTTTGAACCCCTAACACCCCCAGGAACCCATTGTGGATCCGACATGGCCTTGGTTCTTTCCTCAACCCCTAACTCGTTTGTGGGTATGAAGACATCTCCACAAAAGTTTGGCTTGGACCAAGAATCTGAATCTACTAGACTCTTTAATATAAACAAGCACAGTGACATAGACAAATCAGGATCAAATCCAAGCTTCAGTAGTTTACCATCACCTTTACCAATGATAAAAAAATCTCAGAATGGTGAAGAAATAGTGAGAGACAAGAAGGATGTGATGGAGAATTTTGAAGGAGATATGTCTGATCCTGATGATGACGAACCTATAGAATGTGCTGAATGTAACACTGACTTTCCATCATTACAACAATTTCTAGATCATAACTGTGCAAACAAAGTGAATAATTTACATGAGAATTGTAGAACACCTAGTAACACAAGTGAACTAAGTGAAGGAGAAAGTTTTGATGGAAGAATTGTTTACAATCCAGATGGATCAGCATACATTTTAGAGGATGGTGATTCTAGTCTGAGTGACTTGGACTCTTTAATTGGTGTCTCCGATCGAAGACAACTTATTGTTGATAAGAAAGGAAGTGACACTGTCTCACAAGTCCCAGCTTTGCCTCATATTGCCAATGCCATTTTTGTTCCTAGAAATCCAAGCTTTGATTTTTCACGAGAATATTTGCCTCAGGCACCTATCATGTTTAGCTACAAAGTGTATGATATGCGCTCTGGCAAAAATAAAACTGATGAGAAATCAAGCAAAAATGATGGTGATAGTTTATCTACCTCTGAAGACAGTCAAGACTTTACTAATGTTCCAACTAAGCCAATACTTATGTGTTTTATATGTAAATTGTCTTTTGGATACAGCAAGTCTTTCATTGCTCATGCAGTATCAGAACATTCTATGGTATTGAATGATGATGAGAAGAAAGTCATGTTGCGGAAGAATTCATCAGCGATTATACAATGTGTGGGCACTAAGAAAGAGCCCTTAATGTCATTTTTGGAGCCAAGACCCTTGAAATCCCCATCTACACATAGAAACATACCAAATAGGCTCTTGTCGGACGATATAACATTGCCGAGCTCGTACAAATCATCTCTCGAGGAAAATACCAAAGTCAGCTTTGTACATTCCAAACCAAAGCTATCTGATGCTCTTATCCAGAGTTCTGTATCAAAATCAGAAAAATCAGATTTGTCTCAGGGCAGTCCTACGCCATACCCATATGGTGCTACAAGCGTCACTACTTGTGTTCATTCATCCATGTCTACAATTTCATCATCCCTTTCATCAACTGCAATTGAAAATCTTGCAAGTAATCTACGCTCAAAGCTCAGTCGACATTTGGATTCATCTAGTGCTTCCCCATCTCCTGTGCCATCAATGTCACCTGTCATATCTGTTTCAAATTCAACGTTCTTTCTTGGAGTCTGTGATGAACACCCACAAGGTCGTGTTCAAGGTGTTGAATGTCCAAAATGTGATATGATTCTGGGATCCTCTCAGTCATTGGGTGGTCACATGACAATGATGCATTCTCGTAACTCCTGTAAGACTTTAAAATGTCCTAAATGTAATTGGCATTACAAATACCAGGAAACATTAGAAATTCACATGAAGGAGAAACATCCTGAAGGGGACCAGCAATGTATGTACTGTCTGTCAAATCAGTCTCATCCACGTCTAGCGAGAGGTGAAAGCTATTCATGTGGTTACAAACCATATCGCTGTGAAGTCTGTAATTACTCCACAACAACGAAAGGAAATCTCAGTATTCATATGCAGTCTGACAAGCATTTAAATAATGTTCAGGATTTGGCCAGTGGGGGAGGGGAAATGAAACTCCAAGCCCCTCCTCCTCCACAACAACAACAACAAACTCAACAACAGCCTGTACAGGAACAACAACAACAGCAACAGTCATTACCATCTGTAAATGACGCACAACTGAAGAAAAACAATAAACCAAAGCCCACATGGAGATGTGATGTATGTAACTATGAAACAAATGTCGCACGAAATTTACGCATTCACATGACAAGTGAGAAACATACGCACAATATGATGGTACTACAGCAAAATATGAAGCACATGCAGCGTGATATGCACATACAGCAAATGAATCAACTCATGCTGTTACAGAATGACCCTGCATTTATAACAGGCTACCCTAATACTATACCTGCAACAAACATGCCATTTAATTTAGAGCAATCTATTTATGGTAATGCTGTTCCAAGTTCATACGGAGAAATCCCAATGGATCTCAGAAAAGAAAATGGAGGAATGGGAGTATCGTTTGATCCACAAACTCCAGATAGCTCTAGACTTTATAATTGTTGTGTTTGTAATACATTTGTTACTGATTCTCTTGAATCTCTCCATCAGCATTTACAAGTCGATCGTACAAAGCAACGTGAGGCTGAGACAATATCAATTTCTCAAGGTACATATATATGTAACCTGTGTTCATATAAAACAAACTTGAAAGCCAACTTTCAACTCCATTGCAAGACTGATAAGCATTTGCAACGATTACAACTTGTCAATCATATAAAAGAAGGAGGGTCCAATAATGAATGGAGACTGAAATACCTCAATGTTAGTAATCCTGTTCAAGTCCGTTGTAATTCCTGTGACTATTATACAAACAGTATTCATAAATTACAAATACATTCGGGAAATCCAAGACATGAGAAAAATGCTCAGTTATTCCATTTCCTGCAACTAGGGGAGAGCAAAATACAAGGAAAGTCCAAGTATTACCACTGCACTCTCTGTAATTTCTCCACTCGAGCCAAACTGAATATGATACAGCATGTACGTGCCATGAAACATTTACACAACGAGCAACTTAAACAGCTACAGATGAAAGAACAAGGTGTCACAGATATTGACCCTGGCGAGATCTTCCAAGTTAAAGAGTACAGTGATAGTGACGAAGACCAAATAAAGTTTGATGATGAAGGTTAG

Transcript

Bpl_scaf_64310-3.3

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF12874	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR051968	Family	Zinc finger homeobox transcription regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45891	ZINC FINGER HOMEOBOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09378	ATBF1; AT-binding transcription factor 1	-	Signaling pathways regulating pluripotency of stem cells	ko04550	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_64310-3.3 global RNA-seq network