Gene detail

Detailed information of Bpl_scaf_64193-0.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64193-0.8	PRE-MRNA CLEAVAGE COMPLEX II	Bpl_scaf_64193	1725	18384	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_64193-0.8

TCGCTACAGGTTGAATCGACAAAGAAGTTGCCAACGTTATACTTGATCGATTCCATTATAAAGAACCTCCCAAAATCCACTTATCCGGGATTGTTTTCGCACAATATAGTCAGCATATTTTGTAATATGTTTGAACAGGTAGACGAGAAGACCAGGACGTGTATGCTTGGAGTTCGACAGACGTGGAATCAACATTTCACTGGTAGAAAAATGTATGATTTAGACGTGAACAACATTTATAATAAATGGCCGCTGCCGACATCTACATTAAATATTTCACCTATGATACATGCCAACCCTAAATGTCTGCCACAGACATCGAAAGAACGTGAAATCAGTGGATTAAAAGCATCATCTAGTCGAAATTGTCGTACTAGAACTCGTAGTTCAAATAGTGACAGTAAATCTGGAAGTGAAAGTAAAGAAGGGACGAAAAATAAAGAGGATCACGATAACGAAAAATCTCAAATAGAAGAAGAAAAAGATCGTGGTAAAACTCAAAATGTAGATAATCAGAGAGGTAAAGGAAAAATAACTCGTGTAGACTCAGATCATGACAGTAGGAAGAGAAATGGTGTAGGAGATGACAGAGATAAAGGTAAAAATTGGAGTGACTCGAGAAATAGGAAAAGTAAATCACCAAGATTAAGTCATGAAAGGTCAAGGTCGCCAGTGAAAGATTCTGGAAGAGGATCTAAAAATCCACCACGTAAAAATAAAGCTATAAATGAATTAAAAAATAATAATAAAAAACAAATGGAAGAACAACCAAAATTAGAGCATAGAAAACCGATATCAAGCTTGCCTAGAATACCAAAACGAACTGGTACAGATGTTGATGAGAGGGTAACGGAAAAAGATCATGATGAACGTAGACTGTCCTCCTCAAACAAGAGAGATCTGGACGAAAGACATGATTATAAAGAACATGAGCCAGTAAGGACTAGTAAAAAACCAAGAATCAGCCAAGAAAGAGACGTGCCAACCATCGAACCAGTGACTGTACATACCAAAATGAATGAAGACATCAGAATGAGAAACAAACCTAAGGACAAAAAACGTGCAGATCCTAGAAAGTCTGCCAGTGATTGTAGGAGTAAAGAATCGAAAGAACGTGAAATCAGTGAATCAAAGGCAGCATCTAGTCGAAATAGTCGTACTAGAACTCGTAGTTCAAATAATGACAGTAAATCTGGAAGTGAAAGTAAAGAAGGGACGAAATCTAAAAATAAAGAGGATCACGATAAAGGAAAATCTCAAATAGAAGAAGAAAAAGATCATGGTAAAACTCAAAATGTAGATAATCAAAGAGGTAAAGGAAACAGAACTCCTATAGATCATGACAGTAGGAAGAGAAATGGTACAGGAGATGACAGAGAAAAAGGTATAAATTGGAGTGACTCGAGTCATGCAAGGTCAAGGTTGCCAGTGAAAGATTCTGGAAGAGGATCTAAAAATTCACGACGCAAAAATAAAGCTATAAATGAATTAAAAAATAATAATAATAAACAAACGAAAGAACTACCAAAATTAGAGCATAGAAAACCGATATCAAGCTTGCCTAGAATACCAAAACGGACTGGTACACATGTTGATGAGAGGGTAACGGAAAGAGATCACAATGAACGTAGACTGTCCTCCTCAAACAAGAGAGATCTGGACGAAAGTCATGATTATGGAGAACATGGGCCAGTAAGGACTAGTAAAAAACCAAGAATCAGCCAAGAAAGAGATGTGCCAACCATCAAACCAGTGACTGTACATACCAAGATGAATGAAGACATTAGTAATTCTCGAAGAAACAACCCTAGTGAACCCCCAATGGAATTTCAGTCTCCTATTAAAGAACCTAGAAATCTTCCTCATGATGCTGACATGAGAAGGGACGATTGTCCTCCTGTTTTTGATGATTTGCACAGAGAAGATGGACTCCCAAGGGGTATACCACGAAGAGACCGTACAAGGGCTGCAGAAAGAACCCAAGAGGATGTGCATACATATAAAGAATCGGATAGACCTTCACATAGAGCAACAGATGTTGACTGA

Transcript

Bpl_scaf_64193-0.8

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04818	CID	CID domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006569	Domain	CID domain	Interproscan
IPR008942	Homologous_superfamily	ENTH/VHS	Interproscan
IPR045154	Family	Protein PCF11-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15921	PRE-MRNA CLEAVAGE COMPLEX II	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000993	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005849	Cellular Component	mRNA cleavage factor complex	Interproscan
GO:0006369	Biological Process	termination of RNA polymerase II transcription	Interproscan
GO:0006378	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0031124	Biological Process	mRNA 3'-end processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_64193-0.8 global RNA-seq network