Gene detail

Detailed information of Bpl_scaf_64138-3.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64138-3.6	RIM BINDING PROTEIN-RELATED	Bpl_scaf_64138	296982	347722	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_64138-3.6

ATGGAAAGTAATCATGATAAAAAATCAAAGGAAGAAACAATGGAAGAAGCAAGGACAGCCATGCTGGAGAAAAAAGGTCCAATAACAGTTTATATCGCCAAATATACCTACGATCCCTATCAGCATTCGCCCAATGAAAATCCTGATGCAGAGCTCCCTCTAAATTCTGGGGACTATGTTTTAGTGTATGGAGAAATGGACGAGGATGGTTTCTTTGATGCCGAGTTGATGGATGGAAGAAGAGGTTTGGTACCGTCCAACTTTTTAGAAAAACTGTCAGACGATGACTTGTCAGAATTCCATGCAATAATGTCGGGGAATAATCCACAGGAACATGACGATGACAGTACCGCAGCAAATAGTCTACAACAGGAACTAGACTTCGACAGTAGCGAAGAAACTGATACAAAGTCAACAAAAAATTCCCAAAGTAAAAGTCCTGCCTTAGAAGATTTTAGTGTCCAGAAAACAGATTTATCTAGTCAGTTAGAACACAGTCCAAATAATACAGTTACGCCTTTTCCTAAAAATTTGGTGCTTGAGCGGCAGTTGGCCAGTAGTATTGTGATAAGTTGGCAGTCACCAGATGGCATTGCTGCACAGGATGTGAGATCATATCATGTCTGTCTCGATGGAAAAGTCATTATCACCGTGAAAGGCAATGAAAGAACGAAATCTTTAATAGAAAACGTAGATTGTAATCAGGTTCATCGAATAAGTGTACGGTGCTTTTCAAGTAAAGGATTGTCTCAAGATAGCCAATCAACATTACTCATTGGCAAAGATGCTGTACCTGCACCTAGTCAGCTGAACGCTAGCAACATCACCCCTAACTCCGCTACTTTGACCTGGTTGCCTGGCAACAGCAACTATCAGCACTGTATATCACTGAACGGAAATGAAGTGAGGGTCGTGAAAGGGTCTGTGTGCAGTTACAATTTAACAGGTTTGGAACCAGGCAGTGAACACACAGTTTCAATTATAGCCAGAAATCCATTGAATGAAAAAACGACAGGACATCAATCAGCATTTGTGAAATTTAAGACACTGAAAGGAGGCATGCCTGAACCTCCAATTAATGTTCAAGTTGAGGCTGGTCCTCAGGAAGGGACATTACTGTTGACATGGTTACCAGTAACAATAGAACCATCAGGATTTTCTAATGGTGCTTTAGTTAAGGGATATGTTGTGTATGCTGACGGACAACGAACAAAGGAGGCAAAGGGAGCAACAAACGATCACATTATTCTGAGTGCTAGTAGTTTTCGAGGATTTATTCCACGTAATTTAGTGGTACGAACTGTGACAACAGATGATGAAGAATCGGCAGATTCTGAGTTAGTCAAACTACCCCACTCTCTCATCAGTGAAATCACAGATAGTGCTGCTAAAGAATTAAAAGAAGTTTCGAAGAAGGGTTCATCAGGCAAGGAAAGACAACCCAGTATAGAACATGAAATACAAAAGGCTGTAGAGGTAGTTACAGAAACTGAAGTTGCTATGAATCCTTCCAATGTTTACGAAGATGACTTTATAGAATCGTCCAGCAACTCGGAACTTTCCGATATCCCAGAGGTAGAGGAAGAGTCCTACTTGATTGAGGAAGCCAATAGGAGTTCAATACAGGATGAACATAGCTCCTCATTGGTCTTTCCGACCCACGATACTCCAGTTCAGGATTTAAATGAGGATGATAGTTCCACTCCAAGATCTACTTCTACTCCTCGTGCCATTCACAAGGCACCGCATCCAGCTTCAGCAGTGCCACCTACAATAAAAGTTGATCTGGCCAAGGATGGACCTCGTGTCTCACCCAAAATGAAAATTCCTGCTATAGAAATTACCAGGGACAGTAGTTCTGAGAGAAGCAATTCATTTGATGTTTCGGAGGATGAATTGGACACAAGTGTTAGTTCTAAAGGGAAACATTCCAATAAAAAACAAACAGAATCTCCAAAAAATAAAAAATCTCCAAGAGATAAAAATGAAAAAGAAATAACACAGACTTCTAATACAGAGAGTGAAATGAGTGAAGAACAATTTAGAAAATCGGTAGAAAAGGATATAGTCCCAAGTGATCATGCACAGACTAACGGATATGAAAGTTTGGATAGTAGTTTCGATAGTAGTCGGACTTTGACTAGTAAAAATGATTCTCCGAGGTCAGTATCAAATACACAGAGAAAACGTCCAACAAATGGTGTGCAAAGTGATCATGACGCTAACGCCAATAAAGTGATAAGGGATAATAGTCCCGTGCGGACGTCTAAACGTGATGACATTCCTTTATTGGATTTAAATGGTTGTGATGATCGTAGCGATGTTGATTCAATCAGTGGAGAAATTAATCCACCGATCGATGACAACCGAGTACGATTATTTGTGGCATTATTTGATTATGATCCAGAAACAATGTCTCCTAATACTGATGCTCTAGACGAGGAACTTCCATTCAAAGAGGGACAAATCATAAAGATTTTTGGAGATAAGGATGCAGATGGTTTTTATCGTGGAGAATGTAATGGCCGAGTAGGTTATGTCCCCTGTAACATGGTCTCAGAAGTTCAAGTTGATGATGATGAACTGGCTGATCAGCTACTGAAAGAAACTCAGGGGACACCATTCAATATCAATGCACAATTGATAGGAAATGATCATTTCATCAAACCAGTGAAAAGTGCAGACGAAATATCAACTAGTCCAAGCAGCATGTTACCTGTTTATGATTCAGACAACCTGCGCCGTATGGTTGCTTTGTATGATTATGACCCGCAGGAATTATCGCCCAATGTAGATGCAGAGGTTGAATTAGCATTTAAAATAGGAGATATAATCATGGTTTATGGTGAAATGGACGATGATGGCTTCTTCATGGGTGAACAAAATGGTAGACGTGGTCTCGTTCCATCCAACTTCCTCCAGGAGGCACCACTTACAGATGACGAAGCTATGGAAAGTGCGAGCGTTGTGTCTCCTGCCAGGTCAGGAGAAAGTCTAGTTACTCTGTCACGCCAGTCAGAATCACAGACACAAAGGATGGGATCTAACAGCACAGTGGAGCCATCACCACAGGATAGGGTAGACAATATTACTGTGAAAACTGATTCCCGGTCCACTACACCAGATGAAGTCAAACAGAAACGTAAAGGGTCCAGTTTCTTATCAAAAGGAAAAAACATTTTCAAGAAACTAACAAGATAA

Transcript

Bpl_scaf_64138-3.6

AAAATAATAGACTGGTAGACTAATTCAGTTTTTACCTGGTCAAACTAATCAATTGACACTTTAAATATCCCACCTTGAATATCAAAGAAATTGATATCAAAATATAATTAATTATTGTTTTAATTAATAGTTTCATATTAATTATATTTTACAGGTCAGTGAAGAATGTAATCTTTTACGACTAAATCTAACCGAGGCCCAACGGGAATGTGAACAAGCTAAAGATGAAAGAAATCGGCTGCAAGTGCAAGTTAAAGACTTAGAACACACAGTCAAGAATCTCAAAGATACAGCTGAACAGTTTACACAATTAGAACATGATTATCAAAGAACAGTACAAAAATTAGAGGAAAAACAATCTCATTTTGATCATTTACAACAGGCTCATGACCAGACAAAGAAAGATTATGAAGAAGCTTTAAGTAAATTACAGAACAGAGTGGGTGATTTACAGAACCAGTGTCAACAACAAGAAGAAAAACATAAGGCTTTGACAATAGAATTAGAACAATTACGTGCAGCTGCAAAGGCAGCTAAAAATAGTCCACGAAACAAATCCAACAATACCTCATTACCACACAGTAAATCAGATTCATTTAACTCGTCTGCATACGATTCACAAAAACATATAGAAAATAGTGACACAAATATCGTTGAATCATCAAAATCATTAGACACAGGTTTTGCAGACGACGATGAAGCTGAATTGTCCAATGGTCTTTCACCAGATCAGGGCAAGACCAACCAATCAGAATTGATAGAAGACCCAGAATTAAATGAAATAGCACAGAAATTAAAAGAATTAGAAGCTTCCTCAGAATCAGAAGAGGAAGTCTGCAAGGAGGAATCGATATCTGAGGAAATCATTGTTATTGAAGACAAGGGAGAAGACTCCGGCATGGAAAGTAATCATGATAAAAAATCAAAGGAAGAAACAATGGAAGAAGCAAGGACAGCCATGCTGGAGAAAAAAGGTCCAATAACAGTTTATATCGCCAAATATACCTACGATCCCTATCAGCATTCGCCCAATGAAAATCCTGATGCAGAGCTCCCTCTAAATTCTGGGGACTATGTTTTAGTGTATGGAGAAATGGACGAGGATGGTTTCTTTGATGCCGAGTTGATGGATGGAAGAAGAGGTTTGGTACCGTCCAACTTTTTAGAAAAACTGTCAGACGATGACTTGTCAGAATTCCATGCAATAATGTCGGGGAATAATCCACAGGAACATGACGATGACAGTACCGCAGCAAATAGTCTACAACAGGAACTAGACTTCGACAGTAGCGAAGAAACTGATACAAAGTCAACAAAAAATTCCCAAAGTAAAAGTCCTGCCTTAGAAGATTTTAGTGTCCAGAAAACAGATTTATCTAGTCAGTTAGAACACAGTCCAAATAATACAGTTACGCCTTTTCCTAAAAATTTGGTGCTTGAGCGGCAGTTGGCCAGTAGTATTGTGATAAGTTGGCAGTCACCAGATGGCATTGCTGCACAGGATGTGAGATCATATCATGTCTGTCTCGATGGAAAAGTCATTATCACCGTGAAAGGCAATGAAAGAACGAAATCTTTAATAGAAAACGTAGATTGTAATCAGGTTCATCGAATAAGTGTACGGTGCTTTTCAAGTAAAGGATTGTCTCAAGATAGCCAATCAACATTACTCATTGGCAAAGATGCTGTACCTGCACCTAGTCAGCTGAACGCTAGCAACATCACCCCTAACTCCGCTACTTTGACCTGGTTGCCTGGCAACAGCAACTATCAGCACTGTATATCACTGAACGGAAATGAAGTGAGGGTCGTGAAAGGGTCTGTGTGCAGTTACAATTTAACAGGTTTGGAACCAGGCAGTGAACACACAGTTTCAATTATAGCCAGAAATCCATTGAATGAAAAAACGACAGGACATCAATCAGCATTTGTGAAATTTAAGACACTGAAAGGAGGCATGCCTGAACCTCCAATTAATGTTCAAGTTGAGGCTGGTCCTCAGGAAGGGACATTACTGTTGACATGGTTACCAGTAACAATAGAACCATCAGGATTTTCTAATGGTGCTTTAGTTAAGGGATATGTTGTGTATGCTGACGGACAACGAACAAAGGAGGCAAAGGGAGCAACAAACGATCACATTATTCTGAGTGCTAGTAGTTTTCGAGGATTTATTCCACGTAATTTAGTGGTACGAACTGTGACAACAGATGATGAAGAATCGGCAGATTCTGAGTTAGTCAAACTACCCCACTCTCTCATCAGTGAAATCACAGATAGTGCTGCTAAAGAATTAAAAGAAGTTTCGAAGAAGGGTTCATCAGGCAAGGAAAGACAACCCAGTATAGAACATGAAATACAAAAGGCTGTAGAGGTAGTTACAGAAACTGAAGTTGCTATGAATCCTTCCAATGTTTACGAAGATGACTTTATAGAATCGTCCAGCAACTCGGAACTTTCCGATATCCCAGAGGTAGAGGAAGAGTCCTACTTGATTGAGGAAGCCAATAGGAGTTCAATACAGGATGAACATAGCTCCTCATTGGTCTTTCCGACCCACGATACTCCAGTTCAGGATTTAAATGAGGATGATAGTTCCACTCCAAGATCTACTTCTACTCCTCGTGCCATTCACAAGGCACCGCATCCAGCTTCAGCAGTGCCACCTACAATAAAAGTTGATCTGGCCAAGGATGGACCTCGTGTCTCACCCAAAATGAAAATTCCTGCTATAGAAATTACCAGGGACAGTAGTTCTGAGAGAAGCAATTCATTTGATGTTTCGGAGGATGAATTGGACACAAGTGTTAGTTCTAAAGGGAAACATTCCAATAAAAAACAAACAGAATCTCCAAAAAATAAAAAATCTCCAAGAGATAAAAATGAAAAAGAAATAACACAGACTTCTAATACAGAGAGTGAAATGAGTGAAGAACAATTTAGAAAATCGGTAGAAAAGGATATAGTCCCAAGTGATCATGCACAGACTAACGGATATGAAAGTTTGGATAGTAGTTTCGATAGTAGTCGGACTTTGACTAGTAAAAATGATTCTCCGAGGTCAGTATCAAATACACAGAGAAAACGTCCAACAAATGGTGTGCAAAGTGATCATGACGCTAACGCCAATAAAGTGATAAGGGATAATAGTCCCGTGCGGACGTCTAAACGTGATGACATTCCTTTATTGGATTTAAATGGTTGTGATGATCGTAGCGATGTTGATTCAATCAGTGGAGAAATTAATCCACCGATCGATGACAACCGAGTACGATTATTTGTGGCATTATTTGATTATGATCCAGAAACAATGTCTCCTAATACTGATGCTCTAGACGAGGAACTTCCATTCAAAGAGGGACAAATCATAAAGATTTTTGGAGATAAGGATGCAGATGGTTTTTATCGTGGAGAATGTAATGGCCGAGTAGGTTATGTCCCCTGTAACATGGTCTCAGAAGTTCAAGTTGATGATGATGAACTGGCTGATCAGCTACTGAAAGAAACTCAGGGGACACCATTCAATATCAATGCACAATTGATAGGAAATGATCATTTCATCAAACCAGTGAAAAGTGCAGACGAAATATCAACTAGTCCAAGCAGCATGTTACCTGTTTATGATTCAGACAACCTGCGCCGTATGGTTGCTTTGTATGATTATGACCCGCAGGAATTATCGCCCAATGTAGATGCAGAGGTTGAATTAGCATTTAAAATAGGAGATATAATCATGGTTTATGGTGAAATGGACGATGATGGCTTCTTCATGGGTGAACAAAATGGTAGACGTGGTCTCGTTCCATCCAACTTCCTCCAGGAGGCACCACTTACAGATGACGAAGCTATGGAAAGTGCGAGCGTTGTGTCTCCTGCCAGGTCAGGAGAAAGTCTAGTTACTCTGTCACGCCAGTCAGAATCACAGACACAAAGGATGGGATCTAACAGCACAGTGGAGCCATCACCACAGGATAGGGTAGACAATATTACTGTGAAAACTGATTCCCGGTCCACTACACCAGATGAAGTCAAACAGAAACGTAAAGGGTCCAGTTTCTTATCAAAAGGAAAAAACATTTTCAAGAAACTAACAAGATAATACAGGAAATATTTTCCCATCAATATTTATCAGCCAAG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF07653	SH3_2	Variant SH3 domain	Domain	Interproscan
PF14604	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452	Domain	SH3 domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR035753	Domain	RIMS-binding protein, second SH3 domain	Interproscan
IPR035755	Domain	RIMS-binding protein, third SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR040325	Family	RIMS-binding protein 1/2/3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14234	RIM BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007274	Biological Process	neuromuscular synaptic transmission	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_64138-3.6 global RNA-seq network