Gene detail

Detailed information of Bpl_scaf_64034-0.18 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64034-0.18	NF-KAPPA-B ESSENTIAL MODULATOR	Bpl_scaf_64034	66509	87805	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_64034-0.18

ATGTCGTTTACACCACCAAGTCTGTATGCCAACATTGGTAATGGAAGAAAGTCTCCTGGCAGTAACAACAATAGTCGTATCTCAAACGGATCATCATTTGAAATGATTCCTCCAAGTTCAGGCTCCAGGACTCCAGCAGATTCAAGTTTCTTAAACTTTCCGCTAGGAGCTCCACTATCTTTCAGTGATATCACAGCAGAGCAAGCTCTGGAAAGAGTACAAGAACTCATGAAAGAAAACCAGAACTTGAGAGATTTTTTAAAAGAAAATAATTCAGTAATAAACAATAAATATCAAGAACTAGCTAAATGGAATGAAAAAATAAAGAAATACCACAAACACAACCAAGAAAAGTGTGAAGAGGCAAAAACTGTCATACTGAACCTAAGATCAGAAAATGATGATTTAAAGAAACAACTACAGGAAACAAAAACCCAGGCATTTCATACTCTAAATGAGAAAATACATCAACTGGAAAAGCAGAAAAAAGATCTTGAAGATGAAAAAAGTAAGAACAGTGGTCACCAAAAACATGAAGGTCATGACAATTTTGATGCATTTGTTCAGATTGATGATGAACACACCAAACAGCATCATTCTGAGAGAATTACAATGTTGGAGGTTCAAGTGCGTGAATTCCGTGACAGTAATGAACAACTGATCAAGGACATGGAAAAACTTAGACAAGTGAAAGATAATATACAAACTGAAAATTCTGATTTGACCAATCAGAACATAGAACTTAGTCAAAAATTACAAAATGTGTTGTCAGATTGTAAGGCTGCTAAAGCAGAGAATCGTCATTTAAAACAACAGATTGATATTAAAAAATCACAAAGTGACACAAGTTTAGCACAGATGGGATACAGTTTAGTACAAGGTAGTGAAAGAGAAAAAGAAAATTTACAGAAAGCAAGTGAAAATCCTAAAGATTGTAAAGAAATGAACCAACTACAAGAAATGGTACGAAAACTGCAAATAGAGATTCATGAGAAGAATAGAACATTAGATGAATATAGAATGAGACAGGAACAGGAAGTGATGCAATTAACACAGAAACACCAAATGGAATTAATGGAGAAATTACAAAGTGCTAAAGAAGAACAGTCATCTGATATCAGAAGTTTACAGGCTCAAGTTTTGTCTTTGATTAATGAAGTGACAGAGTCACAGAGTAAATGTGAAGCAGCTACAGCAACAATCGACCAAAGGAATGCAAGAATATCAGATATTGAAATGGTAGCAAAAAGAAAACAGGAAGAGACAAATAAAGCACTTCAAGATTTAAACAACTTAAAATCAGCATTATCAACCATTGGTCAGTTTGGGACACAACTGTGTCAGTTTAAATTAAGTTTTCGACCTGTTAAAATGGAGATTTCAGTCCAGGAATTTCTTGGACAACTTGGTCCAGAATTCCAAAAGTACACAAATATTTTCCTCGAAAATGAATTTAAGGACAACAGTTCCCTTCGTGCCATGGATATCGACCAATATTTGGATTTAATGTTTGCTTGTGATCCACTGCCACTTGGACATAAAAGAAAAATCCAGTTAGCTCTCAGAAATTTAGTTTCGCCAACAAATATTAACAGTGATGCATTTACCAATCTACCTGGAACTTTTAATACAAATATGCAAGTAGTAAATGAAACCAATGAGGGAAAATCTAGTATGGATAAAGTAAAAGAAAAGTGTTTAGATGATTTAAAACTAAAAGAAAAGGAATTGAAAGATCTTCAAAACAAAAGAAAGTCCCTTGATGTAATAATTTGTGACCCTGAACCAGTTAGACCATTCAAAAGTACACGCTGTGGAAACTGCCATTTAAGGGGCCATAAGGCCGATGGAAATAGGGGCAATAAGTCATGTACCTTTCCAGCATGTAACAGTTGGAAAGATTGTGGGCAAAAGGACAAACACCCTGAACATAAAAGGGAATGCAAACAAATTGAAAAGGACATTAAACATGTGGAAAAAGAAGTACCGTAG

Transcript

Bpl_scaf_64034-0.18

GTTGTTTTTATCTACATCCGGTGGAAATCCCTCGCAGAATTTTCAACATTTGATGATGATCATGACCACAAGAACTGTTTGTTGAAAAAGAAATGTGAAACTATTACTAGATGATTACATTATGTTTGTTAGCCTACAAATTGCAAAAGATATGAAATAAACAAGTATGTCGTTTACACCACCAAGTCTGTATGCCAACATTGGTAATGGAAGAAAGTCTCCTGGCAGTAACAACAATAGTCGTATCTCAAACGGATCATCATTTGAAATGATTCCTCCAAGTTCAGGCTCCAGGACTCCAGCAGATTCAAGTTTCTTAAACTTTCCGCTAGGAGCTCCACTATCTTTCAGTGATATCACAGCAGAGCAAGCTCTGGAAAGAGTACAAGAACTCATGAAAGAAAACCAGAACTTGAGAGATTTTTTAAAAGAAAATAATTCAGTAATAAACAATAAATATCAAGAACTAGCTAAATGGAATGAAAAAATAAAGAAATACCACAAACACAACCAAGAAAAGTGTGAAGAGGCAAAAACTGTCATACTGAACCTAAGATCAGAAAATGATGATTTAAAGAAACAACTACAGGAAACAAAAACCCAGGCATTTCATACTCTAAATGAGAAAATACATCAACTGGAAAAGCAGAAAAAAGATCTTGAAGATGAAAAAAGTAAGAACAGTGGTCACCAAAAACATGAAGGTCATGACAATTTTGATGCATTTGTTCAGATTGATGATGAACACACCAAACAGCATCATTCTGAGAGAATTACAATGTTGGAGGTTCAAGTGCGTGAATTCCGTGACAGTAATGAACAACTGATCAAGGACATGGAAAAACTTAGACAAGTGAAAGATAATATACAAACTGAAAATTCTGATTTGACCAATCAGAACATAGAACTTAGTCAAAAATTACAAAATGTGTTGTCAGATTGTAAGGCTGCTAAAGCAGAGAATCGTCATTTAAAACAACAGATTGATATTAAAAAATCACAAAGTGACACAAGTTTAGCACAGATGGGATACAGTTTAGTACAAGGTAGTGAAAGAGAAAAAGAAAATTTACAGAAAGCAAGTGAAAATCCTAAAGATTGTAAAGAAATGAACCAACTACAAGAAATGGTACGAAAACTGCAAATAGAGATTCATGAGAAGAATAGAACATTAGATGAATATAGAATGAGACAGGAACAGGAAGTGATGCAATTAACACAGAAACACCAAATGGAATTAATGGAGAAATTACAAAGTGCTAAAGAAGAACAGTCATCTGATATCAGAAGTTTACAGGCTCAAGTTTTGTCTTTGATTAATGAAGTGACAGAGTCACAGAGTAAATGTGAAGCAGCTACAGCAACAATCGACCAAAGGAATGCAAGAATATCAGATATTGAAATGGTAGCAAAAAGAAAACAGGAAGAGACAAATAAAGCACTTCAAGATTTAAACAACTTAAAATCAGCATTATCAACCATTGGTCAGTTTGGGACACAACTGTGTCAGTTTAAATTAAGTTTTCGACCTGTTAAAATGGAGATTTCAGTCCAGGAATTTCTTGGACAACTTGGTCCAGAATTCCAAAAGTACACAAATATTTTCCTCGAAAATGAATTTAAGGACAACAGTTCCCTTCGTGCCATGGATATCGACCAATATTTGGATTTAATGTTTGCTTGTGATCCACTGCCACTTGGACATAAAAGAAAAATCCAGTTAGCTCTCAGAAATTTAGTTTCGCCAACAAATATTAACAGTGATGCATTTACCAATCTACCTGGAACTTTTAATACAAATATGCAAGTAGTAAATGAAACCAATGAGGGAAAATCTAGTATGGATAAAGTAAAAGAAAAGTGTTTAGATGATTTAAAACTAAAAGAAAAGGAATTGAAAGATCTTCAAAACAAAAGAAAGTCCCTTGATGTAATAATTTGTGACCCTGAACCAGTTAGACCATTCAAAAGTACACGCTGTGGAAACTGCCATTTAAGGGGCCATAAGGCCGATGGAAATAGGGGCAATAAGTCATGTACCTTTCCAGCATGTAACAGTTGGAAAGATTGTGGGCAAAAGGACAAACACCCTGAACATAAAAGGGAATGCAAACAAATTGAAAAGGACATTAAACATGTGGAAAAAGAAGTACCGTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11577	NEMO	NF-kappa-B essential modulator NEMO	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021063	Domain	NF-kappa-B essential modulator NEMO, N-terminal	Interproscan
IPR051301	Family	Optineurin/NF-kappa-B Essential Modulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31553	NF-KAPPA-B ESSENTIAL MODULATOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0043122	Biological Process	regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19946	OPTN, FIP2; optineurin	-	Mitophagy - animal	ko04137	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_64034-0.18 global RNA-seq network