Gene detail

Detailed information of Bpl_scaf_63854-11.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_63854-11.5	SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN	Bpl_scaf_63854	1090019	1096650	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_63854-11.5

AAAGACGAATTTGTCGATCATAGAGCGCAGCTTCATCTTCTGTTATTGTTTCTTGCTCTGTCATTTCGGTGACGGTGGTATCGAATTTTGCCGGGGGTATATCGTTCTTAAATGACATTTAATTGGTCAAGTATTTAGGAGAGTTATATTTGGAGAATATTTTATCCAATCAAATTGAGCTTAACAGAAAATTACGAGCACTTGTCATTTAACTCACCTTTTGTATCTCCTCACAGAAGATCTACTTTCACAATCCACGCAGTCAGAACAATTCAAGACTGCAAGATGTTACTGGAAAATGATACGTTTTTAACAGAGCTAACTAAGATGTTTCAGAAAGGAAGGTCATCTGGTTCATTAATGTTGACCATGAAACGATGGGATGGTCACACCAAACCAAAGCCTAGAAGAGGAAATCTGCCAGAACCTACTGAATATAAATGTTTAATTAGAGCAACATTAGGCAATACAAAACTTAGTACAGTGATTAATCAAAAGGATATCAATAAATTTCACATGGCGTATGCTAATCTTTTAAAAGGAAATATGGATGGATTAAAGAAAAAAGACAAAAAATCAGCCACCGGAAAGACAAAAGCTACTCATTGAAAATATTAGCATTTACTGTTGTTGTATGAACACATTGAAAATATTAGCATTAACTGTCATATCACCACATTGAAAAAAATGATTGGTAGTCCAGAGATCAGCATTGATTAGACATTGTCATCATTTTTGTCATTCTGATGTTTTTTACCACCCAGAAAGGGTTTGGCGACAAGGAGAGGAATACTGCCTACCTCAACTTATACATAAATATTGGCCGATTTATGAACAGGAGAATTAGTCTTGTGTAATTAAATTGAAATCATGTTTCATGTACATGTTTGTTTCTTATTTAGAAGTACTGTGAAATCTATGTAAATAAACCTGATTTATGTTTACAGGACATCTTGTTAAGTTCAACAGCTTTACTGCTTAACAACATATTTATATACATGTAATGAAGTGTCAGTTTTTACTATTGCAATTATAGAAATAGTAATATTCCAATATTGTTTTTTGTTATAATACTTGCATGTGAAAGTTGTAGTTGTGTTTTCTCCCATTATGACATCATTTTAACCCCGCTGAGCCAGTGGTAGAAAAATCTGTAATCCTCTAGAGGATTAAAATGTCTCGTGCCTTTCCCCGCATTTGACTTGTTTGACGGCTTTTGAAATAAAGTTTTTTAATTTAACTCTCTTGAGTGGAGAAATATCGTAACCCACTGGCAACTGAAGGAGAATCTATATATCCAGTTTCTACAGTAAAAATAAACTTCTTTTCTGTGAAAACATTTTTTTTTTTGCATTTTAAACCAAGAATAATTTGGATTTATGTAGATAGATTTCACTGTACTGTCTTTATGGCAAATGTGTAAGGTGTAATATATTTAATATATATATATGATACAAGCAATAGTCACAAGTTTGTTTTTTATTGGTAATAAGTATGTGAGTATGTTTTTTGTCTGGAGTTAAGTACAAATATTCAGTCTGAAAATGGTAATGCTGATCTAATTGTATAAAAGGATCATATTTAGAATTCAAGTTCAGAAGAAAATATCCATTTGACAACCATAGCTCACACCATTGTATTAATGAGTCATTCATATTGTCTAATATTATCAAGTTTAAAATTCACATTTCAAACATGCAAAATATAAATATGTTATCTTGAATTATGTGAGATTGGCATATTGTAATCTCAGTTTTGTATATTTTGAATTTGTTTTTAGGTGATTTTTGATACAAGTTCCATTATAGTCTTTGTCTTAATTGTTTTTCACTACTTGCCTGAAAGCCAAATTTAGAACATTTTTCTATTTATTCAAACAAATTCTTTCATAATTTTCACATGTCCGAATCCAGGTTTACTTGTCCTGGGCTTCGGGCAAGTGGGCCAGCGTGAAGACTGTCATTAATTTTCCACATGTTTTTTTTCTCTCAAGTTATTTGAAAGTAAACTTTGCAGAAGTGATCCTGTGATCCTCTTTAAAAAAAAATTCTGTTAGAAATCAAAGATGGCCATCATCTATAGTACAAAGTTTATCATAGGACCCAATGGAAATAAAATCTTATTCTAAAAAAAAAGATAAATAGATGGAACCCATACTGTACATCAATTATCATTGGGGTTTCAATGTTATGACAAAATGAAAATCTGTAAATATTTGTCTTGTAAAACATTGGTATCATTTTATTGTCATTTATAAGTGCATTTTATATCTAAAGCCAAATATTCATAATTTGTTTTGTAACATTTTGTCGAATTTAAGGAACTTCGTCTTCAGTTAGATCCAGACAGTAAAATTGAATCATCTTCAAGTTGAATTTACACCCTATGTGCATCTTGAATCTTTTGGCAGATCTGTGCAGTCCAGTAACTTATTAATAAATTTTCTGTTTAAAAATACATGTATATCTTTTCTGATTAATTCATTTTAGAAGATATCTAAATTGTAGACCCAGTATATTAGGTGTATTGTTCCATTTACATCACTGCAGCTTCTAATAGGTTTGAAGATACCAAAGGGGTAATCAGAAGCTATTGAGCAAAGGACAGAATACAATGTCCAAAGAAATTGTAAGACAAACCACAGAAAATAAAACAAGAGTGAACTAAGGTGCTCCAGAATTGAACACAGTTCCTGCTCTACTAGTGGCAGCCGTCTGTTAAATAAGAATAACGTCATGTGATTTGGAAATAGTGTTGAACACCAGTATACATAAAAAAATGGAAATAACAAATAAAGCAAGAACTCCCTACTAAACAAATGGAAGTAAAGATAAACCGAACATCGTTTTCACGCACAGAAATCATCGTGGACAGCACAACACAGAAATAAGAACGTGAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02290	SRP14	Signal recognition particle 14kD protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003210	Family	Signal recognition particle, SRP14 subunit	Interproscan
IPR009018	Homologous_superfamily	Signal recognition particle, SRP9/SRP14 subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12013	SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005786	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312	Molecular Function	7S RNA binding	Interproscan
GO:0030942	Molecular Function	endoplasmic reticulum signal peptide binding	Interproscan
GO:0045047	Biological Process	protein targeting to ER	Interproscan
GO:0048500	Cellular Component	signal recognition particle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03104	SRP14; signal recognition particle subunit SRP14	-	Protein export	ko03060	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_63854-11.5 global RNA-seq network