Gene detail

Detailed information of Bpl_scaf_6373-8.14 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_6373-8.14	DNA2/NAM7 HELICASE FAMILY	Bpl_scaf_6373	841718	871525	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_6373-8.14

ATGGTTAATTTTGATAATGCCTATGCTGGTGGCAGTAGAAGTGAAGCTTTACATAGATATAAAACTACATCAAAATCTGCCGAAGGTTGGAGGATATCGGGAGAAAGACCAAACAGTAACAGGTACTGGTATTTATTTATGTTGGCAGTAGAAGTTAAGCTTTACATAGATATAAAACTACATCAAAATCTGCTGAAGGTGTGTATGAGAAGAATAGGAGAATATTTGGGATTAAAGGTACCAGGTCTAGCAGAGGGAAGACCCTCAGTCCTCATTGGTGACAAAGTTATATTAACAGACCCTTCAGATCCAGATGGACCTTGTTATGAAGGCTGTGTACATGAGATGTTAAAGGATGAAGTACTGATGAAATTCAATAAGACATTCCAGGAGTATTACACAGGAAAAGATTACAACGTTATGTTTACATTCAACAGAGCACCTGTCAGAAGATGTCATCAGTCAGCAGAATTTGCAGTGCAGTTGGGAGAAAATGTTCTTTTTCCATCCATCTTGATGCCAAAATTATCACTGACAAGATCCTTATCTCAGAGTGCTTCAGTGTTGCCTATGAATTCAAAGCAGAAACCTGGACAACAAAAAAGAATGCAGTATTATAATAAGTCTCTAAACCCCAGGCAGAGGGCAGCGGTCAATAGGATATTAGAAGGACAGTGTAGACCTATACCATATATATTGTTTGGTCCTCCAGGAACAGGTAAAACCGTTACAGTTGTTGAGAGTATCTTACAGATTTTACGGCAAATACCATTCAGTCGAGTCTTGGCATGTACACCCTCTAATAGTGCAGCTGACCTTATAGCAGAGAGACTTCATGAGAGTGGACAGGTGAGGACAACAGATATGGTCAGACTTAATGCAGCCCAGAGAAACCAAGAGATGATATCAGAATGTCTCAAGCCATACTGTATGTTTGGAAATGACCTAGAAACTGCTTCACACTATAGGATAGTTGTGTGTACATGTGTATCTGCTGGTGTGTTGTATTCTCTGGGAATCAAAGCAGGACATTTTACACATGTTATTATTGATGAGGCAGGTCAAGCTACAGAGCCAGAAAGCCTTATATCAGCTTGTTTGATTGGAGATGACACAGGACAGATAGTTTTAGCAGGTGATCCTATGCAATTAGGTCCTGTATTGAGGTCGAAGTTTTCTAAGAAATATGGTTTAGAACTGTCCTTTCTAGAGAGGTTAATGAACAGATCATTATATGCAAGGAATAAAGTAATGTTTGCCGATCATGGCTGTTATGATCCACTTCTGGTGACAAAATTGATAGATAATTATAGATCTCACCCAGGCATCCTAGGACTCCCATCACAGCTGTTTTATCATGGAGAACTGATGATAAAGGCAGACCAAGAGCTTACTCATAGACTATGTAACTGCTCAATGTTACCCACTCAAAACTTTCCTGTTATCTTTCATGGAGTTAGGGGTGAGGATCTTAGAGAAGGGAACAGTCCATCCTGGTTTAATCCAGTAGAAACTGTGCAGGTTATACGATATCTCCAAGGACTACTAAATGACCCAGATGTCAAAGTTCAGCCCGATGATATTGGAATTATCACACCTTATAGGAAACAGGTAGAGAAGATTAGACTATTAATAGATAAACTTGGTATGGCATCTATCAAGATTGGATCTGTAGAGGAGTTTCAAGGTCAGGAGAGACAAGTCATCATCATTTCTACTGTACGGTCCAATGAAAAGATGATAGGATTTGACAAGAGGCACACTATAGGATTCCTCAGTAACCCTAAAAGATTTAATGTTGCCATTACTAGAGCTCAAGCACTATTGATAGTCATAGGGAATCCATTAGTCTTAATACAGGATGAGTATTGGGAAGCGTTAATACAGTATTGTATTGACAATGGAGGATATACAGGGTGTAATATACCTGGTATAGATGGACTAGAGGATCATTGTCAGGAATCTGTGGAGAAAGAAGAGAACGGAGACCTAGGAATAAGTCAAGATAATCCTGATTGA

Transcript

Bpl_scaf_6373-8.14

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13086	AAA_11	AAA domain	Domain	Interproscan
PF13087	AAA_12	AAA domain	Domain	Interproscan
PF21634	MOV-10_beta-barrel	Helicase MOV-10, beta-barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041677	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR041679	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR045055	Family	DNA2/NAM7-like helicase	Interproscan
IPR047187	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR049080	Domain	Helicase MOV-10-like, beta-barrel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0035194	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0043186	Cellular Component	P granule	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13983	MOV10L1; RNA helicase MOV10L1	EC:5.6.2.5	Chromosome and associated proteins	ko03036	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_6373-8.14 global RNA-seq network