| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_6373-13.12 | METHYL-CPG-BINDING PROTEIN | Bpl_scaf_6373 | 1304457 | 1320344 | + |
| CDS | |||||
| Bpl_scaf_6373-13.12 | |||||
| Transcript |
| Bpl_scaf_6373-13.12 |
| Protein |
| Bpl_scaf_6373-13.12 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | MBD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01429 | MBD | Methyl-CpG binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001739 | Domain | Methyl-CpG DNA binding | Interproscan |
| IPR011257 | Homologous_superfamily | DNA glycosylase | Interproscan |
| IPR016177 | Homologous_superfamily | DNA-binding domain superfamily | Interproscan |
| IPR045138 | Family | Methyl-CpG binding protein MeCP2/MBD4 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15074 | METHYL-CPG-BINDING PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006281 | Biological Process | DNA repair | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K10801 | MBD4; methyl-CpG-binding domain protein 4 | EC:3.2.2.- | Base excision repair | ko03410 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_6373-13.12 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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