Gene detail

Detailed information of Bpl_scaf_6373-13.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_6373-13.10	PROTEIN NEDD1	Bpl_scaf_6373	1283616	1304337	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_6373-13.10

ATGAGCTGTATAAAGTTAGCATCAGCAGGGGATGATATTAAAATTTGGGACATTGGTGATTTCTCACTGGTAAAGCAGTTCAATCCACATGAACAAAACGTCAGTGCCATTGCATGGAATGGTAAAAAATCTGCATGTGAAAATGTTTTACTATGCAGTGCATCGCCAAACAGTGAAAAAATATCTTTTGCTGCAGTCAAAGATACAGCTGTTACTGTGTCAGAGTTTGATTGTATGCCAGGAAATTTGTGTGTAGATTTCAATTCAACTTCATCCTATTTGTTAGTTGGTGGAGAAGACAGTTGTATAAATGTATGGGATCTTAAATCCAGAAAGATCAAGAAAACATATAAGGATCACAAAGGCCCAGTAACATGTGCCCAGTTTAATTGCAATGATACATACATTGCTTCAGGTTCAGAGACAGGGGAGATAATTCTATTTAATGTTGTAACAGGCCAAGGATGCAGTCCTATGGTAGCTCCAAGAATACAGACTATCAAGCAGATACAGTACAGTAAATTTAGGAAATCTTTATTAGGATCTGTATCAGATGATGGAGCAGTCAATCTCTGGGACATAAATACAAGGAGGATGCTTCACAGCTTTACCAACTCACACATAGCTCCAGCCACTGGGCTTAACTTTTCACCAATTAATGACATTTTGTTAATGTCTGTTGGTCTTGACAAGAGAATTGTTTGCTATGACACGCAGGGGAAAAAACCTGTGAAGACAATGAAAGCAGAGAATCCATTAACATCAATAGATGTCATGGCAGATGGAGCCACTGTTGCTGTAGGATCCACAAGGGGGATAATTTATATTTATGATTTGAGACATGGTAATGCACCAATGAAAATAATCAATGCTCATAAATCTTCAGTACAGTGCCTCAAATTCCAACATGGTATTTCTCATGAACCAACAACCAGTGCCAATTCTACATCATCATCAGCATTATCACCCAATAGGAGACAGTTACCATCAGCCCCTGGTGCTAAAGGCAATCATAATAAAGATATTTCAGAGCCTTATAACTTCAACAACCACTCAGATGCTGCAGCAGAAGAAGATGTGTTTTCTCCTGTCCGTAATGATCTTGGAAACAGTTCTGTAGATTTTAAGGTAGAGACAGGAGGAAATAGTTCACTGTTCAACACACATTCTTCATACCGTAGTACAGATAGCTCAGGAGGTTTATTTTCACCCTTAGCAGACGGAGACAGTGTGAGCAGACGATATGGGGAGAGAATCAAAGTATCGCCATTAGTTACAAATTCATCACCAGTCATGAGCAAACAGGAGGAGATAACTGCATCAAAGGAGTACAACCAATATAATGGAAACATCTATGATGATGGCATTGTACGGCAAAATTTACAATACAGTGATTCACACCATGAAACAGAAATTGATGGACAGCGATATTCAAATACCAGAGAATTACCTTTTAAAGGAAATAGTCATTCATTTGAGAGAGGGAAACATTCCAATGAATACAGGAACACTAGCCATACAGACCTTGTTTCCAAACCACAAATGAATACCTTAGGTGCTAGTACTTCATACAGTGGATCAGTTCACAGATCACCACAGCCAAGAGGGAAAAGTCCACAATCAGCCAGTCCAAGACCACAGTCTATTCATAACTCTAGACAAGATTCCACTTCTTCTCAAGGATTTTTTACAGACAATTCTCCTAGTGCATCTGAAAATTTCACAGCCTCTAAAAAATTAGATGATTCTCCTAGTGGTAGTGCTGGAGGTCATGGTCAATCTCCAATCAGAACTTCTGGGACACCAGATGGTGCCCATGCTGTGTCCCTAACTTCAAATGGTGCTTTAAGACGTTCTCAGGAAGGCAGTGCTTCTGCAGCCTCTGTGCCTCAAAATTTTCAAACACAATTTATACGCAATATGATTGAAGATGCCATGGAGGATTATAAAGAACAAATTCACAATCAATATTTGAACCTTCATTTAGAAATGATCAGACAGTTTCAGATTCAACAGAATGAAATGACACAGTTATTGCAGCAGTACTCTGTGAATCATGAACTGATACAAGAAGTAGAAAGACTCCGGGAAGAAAACAGAAGATTAAAAAAGAATTTTTAG

Transcript

Bpl_scaf_6373-13.10

CGGAAGTGGAGATGATGGCGGGATTTTGCAGATCAAATCAAAACAAACCATAGAAATAATCTAATATTCATGATTTTCGTTTCAATATGTCTTTAAGTTAACTGTACTCTGTAGTAAATATGTGAATCACTACCTTTCATTGTTTAATAATGCGCGAATGTTGAAAAAAAAATGTAAACATTGTAAAAATATAAATAGTTTCCATTCATTTTATTACTCATTGAGTCATTCCATTCAAGATTAATATTGAGATTTGAGTCAGTACTGATAAATTATTAATCAACCTTTTATAAGAATGCTGAACGAAATATGAGCTGTATAAAGTTAGCATCAGCAGGGGATGATATTAAAATTTGGGACATTGGTGATTTCTCACTGGTAAAGCAGTTCAATCCACATGAACAAAACGTCAGTGCCATTGCATGGAATGGTAAAAAATCTGCATGTGAAAATGTTTTACTATGCAGTGCATCGCCAAACAGTGAAAAAATATCTTTTGCTGCAGTCAAAGATACAGCTGTTACTGTGTCAGAGTTTGATTGTATGCCAGGAAATTTGTGTGTAGATTTCAATTCAACTTCATCCTATTTGTTAGTTGGTGGAGAAGACAGTTGTATAAATGTATGGGATCTTAAATCCAGAAAGATCAAGAAAACATATAAGGATCACAAAGGCCCAGTAACATGTGCCCAGTTTAATTGCAATGATACATACATTGCTTCAGGTTCAGAGACAGGGGAGATAATTCTATTTAATGTTGTAACAGGCCAAGGATGCAGTCCTATGGTAGCTCCAAGAATACAGACTATCAAGCAGATACAGTACAGTAAATTTAGGAAATCTTTATTAGGATCTGTATCAGATGATGGAGCAGTCAATCTCTGGGACATAAATACAAGGAGGATGCTTCACAGCTTTACCAACTCACACATAGCTCCAGCCACTGGGCTTAACTTTTCACCAATTAATGACATTTTGTTAATGTCTGTTGGTCTTGACAAGAGAATTGTTTGCTATGACACGCAGGGGAAAAAACCTGTGAAGACAATGAAAGCAGAGAATCCATTAACATCAATAGATGTCATGGCAGATGGAGCCACTGTTGCTGTAGGATCCACAAGGGGGATAATTTATATTTATGATTTGAGACATGGTAATGCACCAATGAAAATAATCAATGCTCATAAATCTTCAGTACAGTGCCTCAAATTCCAACATGGTATTTCTCATGAACCAACAACCAGTGCCAATTCTACATCATCATCAGCATTATCACCCAATAGGAGACAGTTACCATCAGCCCCTGGTGCTAAAGGCAATCATAATAAAGATATTTCAGAGCCTTATAACTTCAACAACCACTCAGATGCTGCAGCAGAAGAAGATGTGTTTTCTCCTGTCCGTAATGATCTTGGAAACAGTTCTGTAGATTTTAAGGTAGAGACAGGAGGAAATAGTTCACTGTTCAACACACATTCTTCATACCGTAGTACAGATAGCTCAGGAGGTTTATTTTCACCCTTAGCAGACGGAGACAGTGTGAGCAGACGATATGGGGAGAGAATCAAAGTATCGCCATTAGTTACAAATTCATCACCAGTCATGAGCAAACAGGAGGAGATAACTGCATCAAAGGAGTACAACCAATATAATGGAAACATCTATGATGATGGCATTGTACGGCAAAATTTACAATACAGTGATTCACACCATGAAACAGAAATTGATGGACAGCGATATTCAAATACCAGAGAATTACCTTTTAAAGGAAATAGTCATTCATTTGAGAGAGGGAAACATTCCAATGAATACAGGAACACTAGCCATACAGACCTTGTTTCCAAACCACAAATGAATACCTTAGGTGCTAGTACTTCATACAGTGGATCAGTTCACAGATCACCACAGCCAAGAGGGAAAAGTCCACAATCAGCCAGTCCAAGACCACAGTCTATTCATAACTCTAGACAAGATTCCACTTCTTCTCAAGGATTTTTTACAGACAATTCTCCTAGTGCATCTGAAAATTTCACAGCCTCTAAAAAATTAGATGATTCTCCTAGTGGTAGTGCTGGAGGTCATGGTCAATCTCCAATCAGAACTTCTGGGACACCAGATGGTGCCCATGCTGTGTCCCTAACTTCAAATGGTGCTTTAAGACGTTCTCAGGAAGGCAGTGCTTCTGCAGCCTCTGTGCCTCAAAATTTTCAAACACAATTTATACGCAATATGATTGAAGATGCCATGGAGGATTATAAAGAACAAATTCACAATCAATATTTGAACCTTCATTTAGAAATGATCAGACAGTTTCAGATTCAACAGAATGAAATGACACAGTTATTGCAGCAGTACTCTGTGAATCATGAACTGATACAAGAAGTAGAAAGACTCCGGGAAGAAAACAGAAGATTAAAAAAGAATTTTTAGAGGAAATCATTTTTTGATGAGAGGTGGGGGGAGGGAACGAATAATTACATATTAGATCGATTTAATTTTATTTTTCTATCTAGATGTACATTTCTTGTAAATTGTGTAAAAACTTGCTGATGTTATAAAATAGTATTAAGAAAACAAATGTCTACATCTTGGACAAAATTAAAATTTAATGCATGTATTATCTTTCTAGATGTGCCGAACTTTTTGTAATGTATGCAGATTTTCTGCAGAAATGTGCCAAAGAATATTTCAACATTTCATAAGAGTGACATCTTTTTACAATTTTCCCCCCACAAACTCTGTAGATAAACTAAATAAATTTTTAGTCTTATTCTTTGCATCCGCATACTTTTTTTAACTTGCCTGGACATACGTTATTTGAGATTTTGGCATCTGTCATCATCCATCCTCCTTAGTCTGTCGACCATACCTTAGTCTTAAATTTTTCATGACCTGCTCTGAAACCACTGGGCAAATGAAAACCAAAGTTGATGTGAATCATCCTTTTATTGTCATAATTGTGTACTATGAATCTGTCAAGTAAACAACATGGTGGTTGTTACTATTAATAGAACATAGGAGTAAAACACACATGGAAAATTCAAAAATGTTAAAACAGCTTTATTTTTAGATTAAATGGTGATATTGTATGAATGTTCTTTACATGGTCCTCTACTTATTTTTATCTTTGGTGCCAAGTTATTTGATGGGAGAAATTCCTATTCTTCCATAATTGAGCCAGACTCCTTCGAGTGTAATTAACTCTGGCTCAAACAATCTGGAGGCTCTCCATATATATACAAAAAGAAAGCCAAACATATATACAACAGGTTAAATCTATATACAGTGATCATGTGATTGGCTCAGTGGTGGGCAGCTCCTGTCAAGGCCATTTGCAGCCTAGTAAGGCCGGCCTTGAAGTTATCCACTGTGGCTGTTGATGTCATCTAGTCTGATAGAGCATTCCACTCCCTGGAAACGAAGGAGTATCTGTAAAGATCTTTGTTGGTATGTTGCTGACGAAGGTGTTGTCCTCCCCTAGTGTGGGCATCTCCGGGTGTGTAAAATCTGGAAGGTTGCTTTCCACTAGCCTGTTCTGGATTTTGATGGCCATTTACCAGTCGGTTTCGCCTGAGCAGGAGTGGCTCCCACTGAAGTTTATCCAGTAGTCTAGTAACACACCCAGGAGATGCATCTTGGTAGCAGTTGGAGACAAATCTAGCTGCTCTCCTCTGGACCTGTTCTATATCACGCTCAAGTTGATGTTGGGGAAAATCTTATTTTTTGGAAATGTACCTGGCAATGAAATGACTATCAGTCTGCAATAGAAACAGTAAGGTTAACTCATTGCACATGGTGTTTGTACTTCTATTGAACAACTCCTTATATTCTTCTATTTTTAGCTCACCTGACCCAAAGGGTCATGTGAGCTTTTGTCATCACTTTGCGTCCGTCGTCGTCCACGTCTGTAAACTTTTCATACTTTCTTCTTCTTATTTGAAACCACTGAACTGATTTGGACCAAATTTGGCAGATGTGTTCATTGGGAGGTCCTCTACTAAATTTGTTATTTTGGTGCAGATCGGAAATCCAACATGGCCGCCAGGGCCAATAATGTGTTCTGATTGGTTGAAAATCTTCTTGTCAGAAACTACTTAGCCGATGGAATTGTAACATTACAGAAATGATGACTGGATGGTCCTCTACTAAATTTGTTATTTTTGTGCCGATCGCATATCCAAGATGGCC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR052818	Family	NEDD1 Spindle Assembly Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44414	PROTEIN NEDD1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000242	Cellular Component	pericentriolar material	Interproscan
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0000922	Cellular Component	spindle pole	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005814	Cellular Component	centriole	Interproscan
GO:0007020	Biological Process	microtubule nucleation	Interproscan
GO:0036064	Cellular Component	ciliary basal body	Interproscan
GO:0043015	Molecular Function	gamma-tubulin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16547	NEDD1; protein NEDD1	-	Chromosome and associated proteins	ko03036	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_6373-13.10 global RNA-seq network