Gene detail

Detailed information of Bpl_scaf_63657-3.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_63657-3.13	RNA-BINDING MOTIF PROTEIN 14B	Bpl_scaf_63657	245660	312247	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_63657-3.13

ATGGTGGAAGTACTTCTGTATGTTGTAATTGATGAGAGGATCCACAATTATTGGTTTTATGGGAGAGAACTGGCTGATGTGAATTTTGGAATCGAAGAGGTTGGAGTTGCATTAATTCTGAATAACTACAATCAACAGATCTATGCAAGTTTACTTAGACTTGTACCGAGTACGTATGGCCCATGTAATTTAGAACATTTAAAACAAGGGTCTCCAGATAAAAAGAACTACGGTTGTCAACAGGGGGTTAATATTACACCAGGAGAATGCTGTGGTGTGGCAGCTACCGAAATATGTCCAATTCATAAGTCAGTCTTAAAAGTTGATGCTCATCTGGCTTCTTGTGCTACAACAGAATTACAAAGATCGTACAAGTTTCGCCGGAGATTTCTTAAATATCTTAGAAGACATTCACCATTTACATACCAATTCCAGCCTAGTGATGGAGCTTTCTCAGAAATATTTGATGGAATTTTAGAGGTGCCTTATGTTGTTGAAATACAGCCATCATACCCAGTGCAAAAAATAGATTTTGCTTGGTACTTTAGAGTTCAAGGGTTATTGATAAAGAAAATGCATTTAGAAGAGGCCATGGCCTGGATGTCAACATTAGGGGGTGCTTTTTCTTCATTGGGTGATTATTTTGAATCTCATGCAGTAATAGCTGGGAATATTTCTTTCAAACAACTAAAAGTTGCCATGGAATTAGCAGATCCAGTGAGCGTAGCTAGATGTCGATTGTTTTTTGCTTTAAGTTTGATGCAGAGAGGATATCTTGAGAAAAGTAGACATATTATCAGAAAACAATTTAAATTTGCCAAAAAAATGGGGGAGCGGGATGAAAGACTGATTGCAATGTGTCGAGGATTATGGACTAAATTTTGTTATTTCAAGAAAAATCAATCACCAGCGGTCACAGATTTTAAAGATGGCGAGATCAAAACAAAGTCCAAATATTTGACTGAAACAAAGTATGTTTTCAAAAGAAGTCAATCTGATATTAAAGAAGAAAGGCTAAAGTCATTGTTTGGTAAAAAAGGGGAGATAACTGACTGTACACTGAAGTATACTAAAGATGGAAGATTCAGAAAGTTTGCTTTTATTGGATTCGGCAAAGAGACAGAAGCCAACGATGCTGTTAAAACATTCAACAAAACATTTATTGATACATCTAGAATACAGGTGGAATACGCTATGGATTTCGGTGATGGGAACAAACCAAGAGCATGGAGTAAATATTCCAAAGAGAGTTCAGCGTTCCAGGACAAAGAGACTGTTGACAAATCAGAGGATAACAAAACTAAATCGACAAAATCTGAAAAGAAGAAAACAGCAAAAGACAAGGCCTTAGATAATATGATGGGAGAGTTACAAAATGATCCCAAGTTTGAAGAATTTTTAGAAGCTCATTTGAAGGGTGGGAAGAAACAGATTTGGAGTAATGATGCAACAGATAAAGTGACAACAAAGACAACTGGTGACAATGAGGACAGTGATGCAGACGATGGTGACAAATCAGATAGTGGAATGGAAGAAATGGAAGTTGACAAGACACAAGAAGAAGAAAGTCCAAAGAAATTATCAGATCTTGATTATTTAAAATCCAAAATGTCTGACCAAGCGCTGCTGAGTGATTCTGACGACAGTGACGACAACTCTGACAAAGAAAGTGACAGTGATGACGGTCGTGACAAAGATGGTGACAGTAGTGACAAAGAGGATGATGGTAGTGACAGCAGTGATGAAGAGGAGGATGACAGCAATAGTGAGGCAGATAGTAAAAATAGTGATTCAGATGAGGAAGAATTGCTGAAGCCAAAAATAGAACAGATTAAATCTGCAGAAGAGAATAAGGAAACAGAAAAAAAGAAATTTGTTATAAAGTTACGAGGATTTACAGGATACGTTGACGAGAAAACAATAAGAGAATTTTTCCACCCTTTAAAAGCAAGTGATGTCAGAATACCTAAAAATGCTCAGAAGAAACCTATAGGTGTGGCATTTATTGACTTCCGTACTGAAAAAGAATGGGATGAAGCTATGAGAAAAAATAAATTATTTATAGGTAGCAAGAGGATATTCTTAAAGAAGATACAGGACGATTTGTTAGAAGATACGACAGAGAAAATAAATACTGAGAAATTTACTGTACCATCTCTTGATAAACAGAGACAAGAAAATGCCGAGTCAGAGGCAGCCATTGCAGACACTGGTAGATTGTATGTTAGAAATTTACCATACATTTGTAAAGAAGAAGACATTGAAGCATTATTTTCACAATTTGGTCCATTGACTGAAACACATCTACCCATTGATTCTTTAACTAAGAAATTAAAAGGATTTGCCTTTGTTACATATATGATTCCTGAACATGCTGTTAGAGCCTTTTCTAGTCTGGATGGAACATGCTTTATGGGAAGGATGCTACACATTTTATCAGCCAAACCAAAAGATGAAGATGAGAACTTATCATCAGAAGGCTCAACATTTAAGACACAAAAACAAGCGAAACAGAAAGCTATGGCCAGCAGTTCACATAATTGGAACACCTTATTCCTGGGTGCTAATGCTGTGGCCAATGTAATGGCAGAAAAGTATGGCACTGAGAAAAGTCAAATTCTTGATGCTGAGACTTCAGGAAGTTTGGGTGTAAGAATGGCTTTAGGAGAAACACAGATTGTATCAGAAACTAGAGATTTCTTGACAGACAATGGAGTCGTATTAGACAGTTTTAGTCAGCCTGGTGGACCTAGAAGTAAAACAGTGATGTTAGTGAAGAATTTACCATCAGGCACCAAGGCAGAAGAATTACACAATGTTTTCTCCAAACATGGAACAGTAGGCCGAGTCATTCTACCTCCCTCTGGTATTACAGCTATCATAGAATTTTTTGAGTCTACAGAAGCTAAACTGGCTTATAAAAAATTAGCTTATACAAAATTTCAGCATGTCCCATTATATTTAGAGTGGGCACCAACAGAAGCATTAAAACCAATCAACTGTGACAGAACAGCTGTACAGAAGAATGTGGAAAAATCTGAGGTATCTGATGATGAGGATGATGAGGAAGAAGAATCTGGGGAACCAGGAAGTACTTTGTTTGTCAAGAACCTTAACTTTGATACAACAGATGAATCATTGAAACAGAAATTTGAAAAATGTGGAAAATTGAAAGCAGCATACATTGCTAAAAAGAAAGACTTAAAAAATCCAGGAAAGTTTCTGTCAATGGGATATGGATTTGTGGAGTACATAAAGAAACAAAGTGCAGACAAGGCCCTGAAAACGTTACAACATACAGACTTGGACGGACATCATCTAGAACTCAAGATTTCTAATAGAGCTTCTATACAACCAACAACAGGAAAGAGAAAGAAGCAAACTAAGAAGGAAGTTAAAACATCCAAGATATTGGTTCGTAATGTTCCATTTGAAGCACAGAGGAAAGAAATATTTGAACTGTTTAAGGTGTTTGGTGAGCTGAAATCAGTTAGATTACCAAAGAAATTGAGTGGTACAGGATCACACAGAGGGTTTGCTTTTGTGGACTTTTTAACTAGACAAGATGCCAAGAGAGCATTTGAAGCCTTATGTCACAGTACACATTTGTATGGGAGACGTCTTGTGTTGGAATGGGCAGAAACTGCTGAAGATTTGGATGAGTTACGAAAAAAGACAGCAGAACATTTTCATGAAGGTAATATACATTTATACAATCTG

Transcript

Bpl_scaf_63657-3.13

CTCTAGCAGACGGAAAGGACAAAACAAATTTGTAAATGTTGGCAATATTAGTTTAAGGTTTTCGTCGTTCATTTAGAATTTGTGCGGTAGAAGGGCATTGTCAGCAGGTTTGGTATTTATGATGAAACTAATGTAAAGAAATGAGATGGTGGAAGTACTTCTGTATGTTGTAATTGATGAGAGGATCCACAATTATTGGTTTTATGGGAGAGAACTGGCTGATGTGAATTTTGGAATCGAAGAGGTTGGAGTTGCATTAATTCTGAATAACTACAATCAACAGATCTATGCAAGTTTACTTAGACTTGTACCGAGTACGTATGGCCCATGTAATTTAGAACATTTAAAACAAGGGTCTCCAGATAAAAAGAACTACGGTTGTCAACAGGGGGTTAATATTACACCAGGAGAATGCTGTGGTGTGGCAGCTACCGAAATATGTCCAATTCATAAGTCAGTCTTAAAAGTTGATGCTCATCTGGCTTCTTGTGCTACAACAGAATTACAAAGATCGTACAAGTTTCGCCGGAGATTTCTTAAATATCTTAGAAGACATTCACCATTTACATACCAATTCCAGCCTAGTGATGGAGCTTTCTCAGAAATATTTGATGGAATTTTAGAGGTGCCTTATGTTGTTGAAATACAGCCATCATACCCAGTGCAAAAAATAGATTTTGCTTGGTACTTTAGAGTTCAAGGGTTATTGATAAAGAAAATGCATTTAGAAGAGGCCATGGCCTGGATGTCAACATTAGGGGGTGCTTTTTCTTCATTGGGTGATTATTTTGAATCTCATGCAGTAATAGCTGGGAATATTTCTTTCAAACAACTAAAAGTTGCCATGGAATTAGCAGATCCAGTGAGCGTAGCTAGATGTCGATTGTTTTTTGCTTTAAGTTTGATGCAGAGAGGATATCTTGAGAAAAGTAGACATATTATCAGAAAACAATTTAAATTTGCCAAAAAAATGGGGGAGCGGGATGAAAGACTGATTGCAATGTGTCGAGGATTATGGACTAAATTTTGTTATTTCAAGAAAAATCAATCACCAGCGGTCACAGATTTTAAAGATGGCGAGATCAAAACAAAGTCCAAATATTTGACTGAAACAAAGTATGTTTTCAAAAGAAGTCAATCTGATATTAAAGAAGAAAGGCTAAAGTCATTGTTTGGTAAAAAAGGGGAGATAACTGACTGTACACTGAAGTATACTAAAGATGGAAGATTCAGAAAGTTTGCTTTTATTGGATTCGGCAAAGAGACAGAAGCCAACGATGCTGTTAAAACATTCAACAAAACATTTATTGATACATCTAGAATACAGGTGGAATACGCTATGGATTTCGGTGATGGGAACAAACCAAGAGCATGGAGTAAATATTCCAAAGAGAGTTCAGCGTTCCAGGACAAAGAGACTGTTGACAAATCAGAGGATAACAAAACTAAATCGACAAAATCTGAAAAGAAGAAAACAGCAAAAGACAAGGCCTTAGATAATATGATGGGAGAGTTACAAAATGATCCCAAGTTTGAAGAATTTTTAGAAGCTCATTTGAAGGGTGGGAAGAAACAGATTTGGAGTAATGATGCAACAGATAAAGTGACAACAAAGACAACTGGTGACAATGAGGACAGTGATGCAGACGATGGTGACAAATCAGATAGTGGAATGGAAGAAATGGAAGTTGACAAGACACAAGAAGAAGAAAGTCCAAAGAAATTATCAGATCTTGATTATTTAAAATCCAAAATGTCTGACCAAGCGCTGCTGAGTGATTCTGACGACAGTGACGACAACTCTGACAAAGAAAGTGACAGTGATGACGGTCGTGACAAAGATGGTGACAGTAGTGACAAAGAGGATGATGGTAGTGACAGCAGTGATGAAGAGGAGGATGACAGCAATAGTGAGGCAGATAGTAAAAATAGTGATTCAGATGAGGAAGAATTGCTGAAGCCAAAAATAGAACAGATTAAATCTGCAGAAGAGAATAAGGAAACAGAAAAAAAGAAATTTGTTATAAAGTTACGAGGATTTACAGGATACGTTGACGAGAAAACAATAAGAGAATTTTTCCACCCTTTAAAAGCAAGTGATGTCAGAATACCTAAAAATGCTCAGAAGAAACCTATAGGTGTGGCATTTATTGACTTCCGTACTGAAAAAGAATGGGATGAAGCTATGAGAAAAAATAAATTATTTATAGGTAGCAAGAGGATATTCTTAAAGAAGATACAGGACGATTTGTTAGAAGATACGACAGAGAAAATAAATACTGAGAAATTTACTGTACCATCTCTTGATAAACAGAGACAAGAAAATGCCGAGTCAGAGGCAGCCATTGCAGACACTGGTAGATTGTATGTTAGAAATTTACCATACATTTGTAAAGAAGAAGACATTGAAGCATTATTTTCACAATTTGGTCCATTGACTGAAACACATCTACCCATTGATTCTTTAACTAAGAAATTAAAAGGATTTGCCTTTGTTACATATATGATTCCTGAACATGCTGTTAGAGCCTTTTCTAGTCTGGATGGAACATGCTTTATGGGAAGGATGCTACACATTTTATCAGCCAAACCAAAAGATGAAGATGAGAACTTATCATCAGAAGGCTCAACATTTAAGACACAAAAACAAGCGAAACAGAAAGCTATGGCCAGCAGTTCACATAATTGGAACACCTTATTCCTGGGTGCTAATGCTGTGGCCAATGTAATGGCAGAAAAGTATGGCACTGAGAAAAGTCAAATTCTTGATGCTGAGACTTCAGGAAGTTTGGGTGTAAGAATGGCTTTAGGAGAAACACAGATTGTATCAGAAACTAGAGATTTCTTGACAGACAATGGAGTCGTATTAGACAGTTTTAGTCAGCCTGGTGGACCTAGAAGTAAAACAGTGATGTTAGTGAAGAATTTACCATCAGGCACCAAGGCAGAAGAATTACACAATGTTTTCTCCAAACATGGAACAGTAGGCCGAGTCATTCTACCTCCCTCTGGTATTACAGCTATCATAGAATTTTTTGAGTCTACAGAAGCTAAACTGGCTTATAAAAAATTAGCTTATACAAAATTTCAGCATGTCCCATTATATTTAGAGTGGGCACCAACAGAAGCATTAAAACCAATCAACTGTGACAGAACAGCTGTACAGAAGAATGTGGAAAAATCTGAGGTATCTGATGATGAGGATGATGAGGAAGAAGAATCTGGGGAACCAGGAAGTACTTTGTTTGTCAAGAACCTTAACTTTGATACAACAGATGAATCATTGAAACAGAAATTTGAAAAATGTGGAAAATTGAAAGCAGCATACATTGCTAAAAAGAAAGACTTAAAAAATCCAGGAAAGTTTCTGTCAATGGGATATGGATTTGTGGAGTACATAAAGAAACAAAGTGCAGACAAGGCCCTGAAAACGTTACAACATACAGACTTGGACGGACATCATCTAGAACTCAAGATTTCTAATAGAGCTTCTATACAACCAACAACAGGAAAGAGAAAGAAGCAAACTAAGAAGGAAGTTAAAACATCCAAGATATTGGTTCGTAATGTTCCATTTGAAGCACAGAGGAAAGAAATATTTGAACTGTTTAAGGTGTTTGGTGAGCTGAAATCAGTTAGATTACCAAAGAAATTGAGTGGTACAGGATCACACAGAGGGTTTGCTTTTGTGGACTTTTTAACTAGACAAGATGCCAAGAGAGCATTTGAAGCCTTATGTCACAGTACACATTTGTATGGGAGACGTCTTGTGTTGGAATGGGCAGAAACTGCTGAAGATTTGGATGAGTTACGAAAAAAGACAGCAGAACATTTTCATGAAGGTAATATACATTTATACAATCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF16065	DUF4807	Domain of unknown function (DUF4807)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR032072	Family	Protein of unknown function DUF4807	Interproscan
IPR034420	Domain	Probable RNA-binding protein 19, RNA recognition motif 4	Interproscan
IPR034421	Domain	Probable RNA-binding protein 19, RNA recognition motif 6	Interproscan
IPR034423	Domain	Probable RNA-binding protein 19, RNA recognition motif 5	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR051945	Family	RRM MRD1 RNA Processing and Ribosome Biogenesis	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48039	RNA-BINDING MOTIF PROTEIN 14B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14787	MRD1, RBM19; multiple RNA-binding domain-containing protein 1	-	Ribosome biogenesis	ko03009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_63657-3.13 global RNA-seq network