Gene detail

Detailed information of Bpl_scaf_63657-1.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_63657-1.5	EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED	Bpl_scaf_63657	86769	122010	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_63657-1.5

ATGTCTAGGTTTTTTATGGGATCGGATTCCGATTCGGAAAGTTCTGCAAGTGATGTAGAAGTAGCACCAAAGACAACGTCAAAGCCATCAGCGATATACCAGTTCAGTGACGAAGAAGAAGATACCAAACGTGAAGTTCGTAGTGCAAAAGACAAGAGATTTGAAGAATTGAAAAATATAATGAAAGCAATGGCCAACCATAAAAAGATAAAGGATATGGCAAATGTACTACAAGATTTTGAAGACTTGGCCAAGGCTTATGTTAAAACAAAGAAAGTCATAGAACAGACAGGCATACCAAGATTTTACATTAAATGTCTGGTAGAATTAGAAGATTTTATAAGTGATATGTGGGAAGATAGAGATGGTAGAAAGCAGATGAGTAAACCTAACAGTAAAGGTCTGACAACGTTACGACAGAAACTCAGGAAATATAACAGAGACTTTGAAGACAATATAAAGTCATATAGAGAGAATCCTGATGCTGAAGAAGAGGAAATACAAGTTGAATCTGAGGAGGAAGATCTAAATGACGAAGTTGTTCCTTCATTAAAACCTAAAATAGCTGATGGTTTCCTCAAACCCATTGAAAAAGACGTCCCTGATGAAGATGATGATGATGACGACGATAGTATGTGGGGATCAGATGCAGAAACCTCCTCAAGCAGTGATGATGAATTACCATCAGTCGGTGGCCTGAGACAGTATACAGCTGCCATGTTCTTGAAAAAAACTGGAGATGAAGCTAAAAAAGATGAAGAAGAAAAGAAAAGAAGAAAGGAAGAAAAAGCCCAGAAAAAGAGAGGAAAGAAAGATGAAGGAGAATGGACAGATGTTGTTAAGGGAGCTCATCATGTCGTGGAGAAAACTGTGATGTTTGCCAAAGACACGGAAGTCAATCATGAGGCAGTCATGAAAAAATTGTCCGAGATCATCTCTGCCCGTGGCAAAAAATCAACAGATAGGAACGAACAGATAGAATTACTACATGAATTGTGTAGTATATCAAACACTAACAACCTTGGTCCAGCTGTACAGGTCAAAATTATGTTTAATATTGTGGCTGCCATCTTTGATTATAACCCTAATATAGCGACCTGTATGAGATCAGAAATGTGGGAAACCTGTATAAAGAATGTAGAAGAATTATTAGATTTAATAGTAAATAATCAAGACATCACTGTAGGGGAAAACATACTAGAGGAAAGTGAAAATGTAGAGACATCACCTTACAGAGTTAGGGGTTGTATACTGACAGTAGTAGAAAGAATGGATGAAGAATTTACTAAAATGTTACAAGCATGTGATGCTCACAGTACAGAATATGTTGACAGGTTGAAGGATGAAACAGCAATCTGTGATTTAATAGAAAAACTTCAGACTTATCTAGAAGGCAAAGCTACAACGGAAGAAATGTGTCGTATCTATCTTAAAAGAATAGAGCATACTTATTACAAGTTTGATCACACCATTATTGATGGCAATATAGAGGATGTATCGAGAGCAATAATGGAGAACCTGTGTAAATTTATACATGCCAAGGATAACAGTGACAGACTTAGGACCAGAGCCATGCTGTGTCACATATACCATCATGCATTGCACAATCGTTGGTTCCAAGCCAGAGATCTGATGTTAATGTCACATCTACAAGATACGATACAACACTCTGATATCCCCACACAGATTCTGTACAATAGAACTATGGTACAACTTGGTCTATGTGCCTTCAGAGAGGGTATGATCAGAGATGCTCATAATGCATTAGTTGATATACAGAGTGGTGGTCGTGCCAAAGAATTGCTAGCCCAGGGTCTTTTGCTACAGAGACAGCATGAAAGAACACCAGAACAGGAAAAAATAGAAAAACGTCGTCTGCTACCTTACCATATGCATATAAACTTAGAATTACTAGAATGTGTTTATTTAGTGTCAGCCATGTTGATGGAAATCCCCTATATGGCAGCACATGAGTTTGATGCCAGGAGAAGAATGATTAGTAAGAATTTCCATCACGTCCTACGATTAAGTGAAAGACAGACCCTTCCTGGACCCCCAGAGAGTATGAGAGAGCACGTGGTAGCAGCTTCTAAATCTATGAAGAGAGGAAACTGGAAGGAGTGTGAAAACTTCATCATTAATGAGAAAATGAATGCTAAGGTTTGGGATCTGTTTTATCAGAAGACTAAAGTTAGAGACATGGTAACCAGAAAAATTCAGGAGGAGAGTTTGAGGACTTATCTTTTTACATACAGTAGTGTATATGATTCTCTTAGTCTAGTCTCATTGTCAGAGATGTTTGAGTTAGAGATAGGAGTTGTCCATTCTATCATCAGTAAGATGATCATCAATGAAGAATTAATGGCCTCATTAGATGAACCTACACATACTGTTGTGATGCATCGTACAGAACCAACACGTTTACAGTCCCTGGCTCTGCAGCTGTCTGAGAAAGTCTCCTCTCTTGTTGACAATAATGAAAAAATCATGGAATTTAAACAAGGCAATTACTTCCAGAAGACCACCCAGAATTACGGGTCGTACCAACAGAAAGATACGTGGCAAGGAAACAAATACCAGCAGAACAAAGATACATGGCAGGGGAATAAATATCAACAAAAGGATAATTGGCAAGGCAGTAAGTATCAACAGAACAAGGATAATTGGCAAGGAAACAGAAGAAATCAAAACAGACAACAAAGAGCCTATTAA

Transcript

Bpl_scaf_63657-1.5

TTACACACCTTCCTTTTCTAATTATTGTGAATATTATTGAATACTTATTACATACATTTCAGCAATTCAAGATGTCTAGGTTTTTTATGGGATCGGATTCCGATTCGGAAAGTTCTGCAAGTGATGTAGAAGTAGCACCAAAGACAACGTCAAAGCCATCAGCGATATACCAGTTCAGTGACGAAGAAGAAGATACCAAACGTGAAGTTCGTAGTGCAAAAGACAAGAGATTTGAAGAATTGAAAAATATAATGAAAGCAATGGCCAACCATAAAAAGATAAAGGATATGGCAAATGTACTACAAGATTTTGAAGACTTGGCCAAGGCTTATGTTAAAACAAAGAAAGTCATAGAACAGACAGGCATACCAAGATTTTACATTAAATGTCTGGTAGAATTAGAAGATTTTATAAGTGATATGTGGGAAGATAGAGATGGTAGAAAGCAGATGAGTAAACCTAACAGTAAAGGTCTGACAACGTTACGACAGAAACTCAGGAAATATAACAGAGACTTTGAAGACAATATAAAGTCATATAGAGAGAATCCTGATGCTGAAGAAGAGGAAATACAAGTTGAATCTGAGGAGGAAGATCTAAATGACGAAGTTGTTCCTTCATTAAAACCTAAAATAGCTGATGGTTTCCTCAAACCCATTGAAAAAGACGTCCCTGATGAAGATGATGATGATGACGACGATAGTATGTGGGGATCAGATGCAGAAACCTCCTCAAGCAGTGATGATGAATTACCATCAGTCGGTGGCCTGAGACAGTATACAGCTGCCATGTTCTTGAAAAAAACTGGAGATGAAGCTAAAAAAGATGAAGAAGAAAAGAAAAGAAGAAAGGAAGAAAAAGCCCAGAAAAAGAGAGGAAAGAAAGATGAAGGAGAATGGACAGATGTTGTTAAGGGAGCTCATCATGTCGTGGAGAAAACTGTGATGTTTGCCAAAGACACGGAAGTCAATCATGAGGCAGTCATGAAAAAATTGTCCGAGATCATCTCTGCCCGTGGCAAAAAATCAACAGATAGGAACGAACAGATAGAATTACTACATGAATTGTGTAGTATATCAAACACTAACAACCTTGGTCCAGCTGTACAGGTCAAAATTATGTTTAATATTGTGGCTGCCATCTTTGATTATAACCCTAATATAGCGACCTGTATGAGATCAGAAATGTGGGAAACCTGTATAAAGAATGTAGAAGAATTATTAGATTTAATAGTAAATAATCAAGACATCACTGTAGGGGAAAACATACTAGAGGAAAGTGAAAATGTAGAGACATCACCTTACAGAGTTAGGGGTTGTATACTGACAGTAGTAGAAAGAATGGATGAAGAATTTACTAAAATGTTACAAGCATGTGATGCTCACAGTACAGAATATGTTGACAGGTTGAAGGATGAAACAGCAATCTGTGATTTAATAGAAAAACTTCAGACTTATCTAGAAGGCAAAGCTACAACGGAAGAAATGTGTCGTATCTATCTTAAAAGAATAGAGCATACTTATTACAAGTTTGATCACACCATTATTGATGGCAATATAGAGGATGTATCGAGAGCAATAATGGAGAACCTGTGTAAATTTATACATGCCAAGGATAACAGTGACAGACTTAGGACCAGAGCCATGCTGTGTCACATATACCATCATGCATTGCACAATCGTTGGTTCCAAGCCAGAGATCTGATGTTAATGTCACATCTACAAGATACGATACAACACTCTGATATCCCCACACAGATTCTGTACAATAGAACTATGGTACAACTTGGTCTATGTGCCTTCAGAGAGGGTATGATCAGAGATGCTCATAATGCATTAGTTGATATACAGAGTGGTGGTCGTGCCAAAGAATTGCTAGCCCAGGGTCTTTTGCTACAGAGACAGCATGAAAGAACACCAGAACAGGAAAAAATAGAAAAACGTCGTCTGCTACCTTACCATATGCATATAAACTTAGAATTACTAGAATGTGTTTATTTAGTGTCAGCCATGTTGATGGAAATCCCCTATATGGCAGCACATGAGTTTGATGCCAGGAGAAGAATGATTAGTAAGAATTTCCATCACGTCCTACGATTAAGTGAAAGACAGACCCTTCCTGGACCCCCAGAGAGTATGAGAGAGCACGTGGTAGCAGCTTCTAAATCTATGAAGAGAGGAAACTGGAAGGAGTGTGAAAACTTCATCATTAATGAGAAAATGAATGCTAAGGTTTGGGATCTGTTTTATCAGAAGACTAAAGTTAGAGACATGGTAACCAGAAAAATTCAGGAGGAGAGTTTGAGGACTTATCTTTTTACATACAGTAGTGTATATGATTCTCTTAGTCTAGTCTCATTGTCAGAGATGTTTGAGTTAGAGATAGGAGTTGTCCATTCTATCATCAGTAAGATGATCATCAATGAAGAATTAATGGCCTCATTAGATGAACCTACACATACTGTTGTGATGCATCGTACAGAACCAACACGTTTACAGTCCCTGGCTCTGCAGCTGTCTGAGAAAGTCTCCTCTCTTGTTGACAATAATGAAAAAATCATGGAATTTAAACAAGGCAATTACTTCCAGAAGACCACCCAGAATTACGGGTCGTACCAACAGAAAGATACGTGGCAAGGAAACAAATACCAGCAGAACAAAGATACATGGCAGGGGAATAAATATCAACAAAAGGATAATTGGCAAGGCAGTAAGTATCAACAGAACAAGGATAATTGGCAAGGAAACAGAAGAAATCAAAACAGACAACAAAGAGCCTATTAATTACAAGTCAAATAAACGTTTATATCAAATCTCAATCTCACAGACATTATTGTTTTGGACACATAATTTATTTTCAGTATGTGTGACTCGTCACATGCTGATATTTATTGTATAAATATTATTTTGTCTGTATATGGCCATTCCAGTTGTGTTAAATTTATTTCAGGTCAAAGGTTAAAAAATAGATAATGAAAATTTACACACACAAAAAAAAAATCATATTTTCCTCATGTTAAAAAAGTATATTTAAAATGCTAACTTGACCAATCAAAATATTCAGTATTTTCATTTGATATTTTGGAACTGTTTCTACTAAAAACTCTAGTCTAACAATTCTACTGGTTTCCTATCAGCTCATTGATATATATATAAAAAATATCAGTAATAAAATGTGTAAAAAATTCTCAACACTAATTTTGACTTGATAAGAATTTAAAGAATGTTACCCATGTTAAACCTACATATTAAAACTATGACTTCCATGAATTATTTCTTAAAAATCAACACTAATTTTGACTTGATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01399	PCI	PCI domain	Domain	Interproscan
PF05470	eIF-3c_N	Eukaryotic translation initiation factor 3 subunit 8 N-terminus	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717	Domain	Proteasome component (PCI) domain	Interproscan
IPR008905	Domain	Eukaryotic translation initiation factor 3 subunit C, N-terminal domain	Interproscan
IPR027516	Family	Eukaryotic translation initiation factor 3 subunit C	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13937	EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005852	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0031369	Molecular Function	translation initiation factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03252	EIF3C; translation initiation factor 3 subunit C	-	RNA transport	ko03013	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_63657-1.5 global RNA-seq network