Gene detail

Detailed information of Bpl_scaf_62829-0.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_62829-0.10	TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED	Bpl_scaf_62829	16247	113336	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_62829-0.10

Transcript

Bpl_scaf_62829-0.10

ATGGATCCATTTAAAGACGTGGGGAAGTTTACCGAGGAGATAGAGGTGATAACATCTAAACATGCTCCTATCGTGTTTGTTGATGGAGATGAAGTTGAAGATGAAGGATTGGATGAATTCAACATGTTGTCTTCACTGGTTGGAACATCACAACAATCTGAACATGCTGAACCTGTCCATGAGTTAATTCAGTCAGACATAGATCCCAGTGGTTCCCTGACAAATATTTTATCTAACTTACCCTCGAAGGATATTACACTTCAGTACTTAGAAGGGAAGTTAAATTTCCAGGAATTCAGTGATATCATGGAGTCTACAGAAGGAGGAGAGAAAATTGATTTCAGAGACTTGGACATTGACGATGCAGATTACTCTCCCTTGGCAAGTACAGGCACAGAGGATGATTCTCCAAGGAAAAAAACACCAAAGGCATTGCAGCCATTTCAAACATTGGCGATGATTTATGAAGAACTTGGAGATATAGATAAGTCTATGCAGTTTAGTTTGATAGCAGCTTATTTAAAGCCTACAGATGCAGATGCCTGGGTGAGACTAGCTGAAATGTCACTTGAAAAGAATGATGTCAACCAGGGAATTAAATGTTATACACATGCAATCAGAGCTGATCCAAGTAATACTAACACTATGTGGGAGCGGTGCAGACTGTTCGAGGAGATAGGGGATCATAAAAGAGCCTTAGAGGGATATATAAGTATACTGAAACACTTACCAGATAATGAAGCTGAAAAATACCTTCAGTTAGCTAGATCTGTTACCAAGTCGTATTATGAGATGGGAGATAAAGACATGGCCTTAAGTACAATGAAGAATGCCTTTGAATCACATCCTCAATATGTCACATCAGAAGATGTTAATTTGTATATAGAGTTGTTAATAACAGAAAGACAATATATTCAGACTGTAGAGGTATTAGTAAATAATTGTGGGGTTAAATATACTACAGATTTGAATGAATGCTGGACATCTGTAAACTATATAGATATCAACAGTATCACATCAGGAGAAATACAGTTAACAAAATGTGATTGTCCTGAAATTCTTCCGATAGATCTGCGTACAAAATTAGCTGTAGCCATGATCAACTTGAATTTAGAAAGTATTAGTAAGGATGTGATAGCACCTATATTTCAAGTAGAAATAGAAGAGAACGGGGACCTTTATCTTGACATTGCTGAAGCTTTCATGGATAACAAAAGTTTTGAGGAAGCCAAAGCAATTTTAGAACAACTGGTATCCTCTACAAATTATAGTTTAGCAGCAGTTTGGCTCAAGTATGCAGAATGTTTAGAACAGTTGAAGGAGATAGATTCTGCTGTAACAGCCTTCAGCCATGTTGTAGAAATGGCTCCATCACATGAACAGACCTTACTTCTACATAAATGTCATCTTTTGCTGTCGCAGAATAAGTATGATGAAATGGTGCAGGCGTGTAAACTTCTCATGTGTCACATGTTTAAAGATTTGACATCACCATCTTTCCTTAGAGTTGTATTCAGTTTTAAGACAAAAAAGCACAAATTGGATTTTTTATTAGAACATCTTAAAGAAGGAAGAAGTGCACTGAAAACAGAACTGTCTGTGGATGATATCTGGGATGTATTTGTAAAGGTGTATGAGACTTTGCATGAATTAAAACGCTATGATGACTTGCTTGAACTCTCTGTATTTGCTATGAATTGTCCATACATTTTAGATGATGTTAGGAAATCAAAGCAAGCAGAATTTATGTGTTTCTTGGCATGTCTTCTGACAAAGAATGGGAAGTTTGCTTTTAGTTTTATAAGAGATATATGTTACAAGGAACCAGACAATAATCAAGTGTGGAACTTGCTAAACCAATGCCTGTTGATCAGTACAGAAAGTAGACACAATAAATTCTCCCTGAGATATTTACTACAGAATCCTGATCACATACCAATAGCTCTACTGAATGGACATAATGCTTCAATATCTGGTACTTACATGTATGCCTTAGGAGAGTATGTAGCTGTAATGAGGGCATGGCCAGACAATCCATTAGTTAGTTTGTGTATAGGAATAACATTCATTCACCTTGCTGGACAAAAGTTTTCTGCTAAGAAGCATTTCTTATTAACACAGGGACTTGGTTTCCTGAACCATTACTTAGAGCTGAGAGGTGAAACACAGGAATCTTATTATAATTTAGGTAGAGCATTACATCTATTAGGTTTATCATATGCAGCTGTTCATTATTATAAAAAAGTATTAGACATGCCTCCTATAGAAGAACACTCTGATGTAATATCTCTACCAGAATTGGCTACACCAGAGACCTCTGACCAAATTTGTGCTTACCCAGTATCTCTACCAGAATTGGCTACACCAGAGACCTCTGCCCAAATTTGTGCTTACCCAGTATCTCTACCAGAATTGGCTACACCAGAGACCTCTGCCCAAATGTGTGCTTACCCAGTATCTCTACCAGAATTGGCTACACCAGAGACCTCTGCCCAAATTTGTGCTTACCCAGTATCTCTACCAGAATTGGCTACACCAGAGACCTCTGCCCAAATTTGGGTTAATTTCAAGTCTTTATTTCAAGTCTATAAGCCTCTGAAACGAGGTGATCAAATTCCAGGTTCAAACCATCGTATGACGTTGCTACAACAAGCCGCAGCAGCAGGAAACCTGGGAATGTTTAACCTAGGAAATATTGGTGGTAACAACGGGTTGCAGCATTTAATACTAGCATTAGCTGCAGCCGCGGCAGGCAGTAATCCAGGAGAAGTAGCCAGTAATAATTTACATCTACAGAACTTACAGGGACTAATGGCATTAGCTAATGCTAATAATCCAGGTTCACTGACAGGTACTACAACCACCTCATCATTACCAGGACTTGCCAGCTTACAGTCTCTCGGAAATAATAATATTAGTGCCCACAATCTCCAGAATGCAGTTAATGGATTAGGTTCTACGAATCATTCAGGGATGGACACATTAAGTCAAGCCTATACAGGGATACAGCAATATGCAGCTGCCTTCCCTAATTCTTTCTCACAGAATACACCACAGATTCAACAAAGTTCTGCAGCTGGGAAACAAACAGAGGGACCGGAAGGAGCCAACTTATTCATCTATCATTTACCACAAGAATTTACTGACAGTGATTTAATACAAACTTTTTCTCCTTTTGGAAGTGTGATCTCTGCTAAAGTGTTTATCGATAAACAAACAAATCTTAGCAAATGCTTTGGATTTGTGAGTTATGATAACCCAGTCTCCGCACAAGCTGCAATACAAGCCATGAATGGTTTCCAGATTGGTATGAAAAGGTTGAAGGTCCAATTAAAACGCCCAAAAAATGACGGCAAGCCCTACTGACATAGGAAACCATTTGATGACACAGTGATGTTACCTCTGTCAGTGGCGTGATGTTCTACGTGTTTTATCTTCACATCCTGTCTGAAAGTGTGTGCGTCATGCAGGACAAACAATTAACAGAGACAATATCAATTTATTTTTTTAATAGAAATTTTGTATACCACATGACATTACAAAATATGTGATGAAGCTTTATATTTTTGTGGCAGTTTTAAACAAGATATTTTGTTTTTAATTTGTTTTAAATTTATACTATTTTACTTTTGTTAATAATTAGCTTTATCTTCAAGTTTAAAATTTTGAATGTTTCTTGTGGTATATGAATTTTCTTAAAAAGCATTTACTCACCATGGATACCCACGTTTTCAACCATACGGCTTTTTATGTTTTAACTACATGTGTGTAATCAAGAAGTTAATCTTTCGTGTTATTTTATATATATACCAAAGATACTGTTTATAATCAAAAGAAGATTTTTTGTTCATTTTTGTTGACATAATCAGTTTATATCATGTGACCTAATTTACAGATTATAAAAGAGTATTGGTGCCATTTTTCATTAAATTAAGCAATTTGATACCAAAGTTATATAATATTTTTGTATTTCACACATATATATATATATATTTTATTTTTCATTTATAAACTAGTACACTATTTAATAACTGGTAGTAAAACTTAGTGAAGGGTATAAACTGATTTTTCTTTTGTAAATTTTCAGATCTCTGTTGAAATCAAAATGATATATATTAAAATATAACCATAGTTACAACTGCTAGCCTTATGTTTTGTTGATATTTAATCTTGTAGACTATTCTAATCTTTGTATAGTTTTTAAATAATGTAATTATACCCGCTCCACCGGAGGGGGGGGGGGGGTATACTGTTTTACCTCTGTCCGTCCCCAGATATTTTTTCGTCGCATTTTTCTCGGCAACTATTGATGGCAGAAATCTGATATTTGGTCACAAGCTTCATATAGGTACCCCATATTGTGGGAAACGCTTTTTGACCCGTCACATTCCTACTTCCTGTTTGCCGAAGAGCGGGGGTATCATAAGTGAGCATTAGCTCACCACGATATAACTTAAATATTGTTGAAAGTGGCATTAAACACCATCAAACAAACAAACAAACATAGAACTGTATTTTTTCATAGTGTGGTTAATGATACATTTTTGTTCCATTCTAAATAAAGATTGTGTAGTCCATATTTGATTTTATTTCTGCGACACATAAGACATGCAGTATGAAATGCACTACTTCTAACTAATTTTATATGTATATTTTGTCCAGTCGTGTTCATGATAAATAACAGCCATATTATTTATTTTTTCTCATCAAATTCACTTGTATTTATATCATTTTGTATCAGTTCAAAGGTTGTGGTTCATGTTTCAAAAGCCGTATCGTTGACAATGTACATTGGTCAGGGTCTCTGTGAAGCTTTGTTGTCATGGTGATACATGATCGATATGTAAACATGTTATCAATCATAAATATATATATAAAAATGTGGTATATGTTTGCAGTGTGAAACATTTATCGTTTAAAAAATGGAGTTGTATTGTTAAATTTTGTTAATATTGTGTGACTTAAATCAAAAGATGTTGTTTATATATAATCTTGTTTTCTTGTGACTAACTACTTGCACATGATGAAAAAAAAAAAATGGTTGTTTTGACACTTTATTTTTTTTGTTTTTAGGAAATATTTAGTCTCTATATATCATGTGTGTTGTGTTTGAAGTTTCAAACTAAAAAAATATGGAATCTTGTAAAATATAGGAAAGTAGTTGTTGTGGCCTTTGATTCATCATATATTTACCTGCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR034199	Domain	CELF1/2, RNA recognition motif 3	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR039340	Family	Transcription factor Tfc4/TFIIIC-102/Sfc4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23082	TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000127	Cellular Component	transcription factor TFIIIC complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006383	Biological Process	transcription by RNA polymerase III	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15201	GTP3C3, TFC4; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)	-	Transcription machinery	ko03021	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_62829-0.10 global RNA-seq network