Gene detail

Detailed information of Bpl_scaf_62428-6.15 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_62428-6.15	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Bpl_scaf_62428	719401	747735	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_62428-6.15

ATGAAACATGAAGTGTCAACAGAGAAACTACCAATTGAACGACCACCTGTGTTAGGATCTGTTACATTCCAAAAATATAGTCGAGATTCAATTGATAGTGACGAAACTGGAAATGAATTACAGAGTTATCTAGCTCCTCCAAAGCAAAAACTGGCTCCAATAGCATCAACAGAAACACTAACTGATCATGATCATGATGCTTGTGTACCATCCATACAAATGGGTGATTCAAGCTCTCTAAAGTTATCATTAGAATCTGGAGAGCTAGGTGAAACTTGTGAATATTCTAGTGATGAAGAGAAGGAATTTTTACACGAATCTCATATTTTTATGTCTGGATCGGAGTCGACAGATACATTTCACACTGCTCGTGATCAGAGTTCTACAACTATTAGCTCAGCGGCAAGCTCTGACACATTGACTCCTGGGACTCCACGAGTAAGTCCTTTTCCATCACCAAGAGTGAGTCCTAGATTTCATATTAGAGGACAAACAAATGGCATTCCAAGAAGTTTAAGTCCTCATGATCGTAGACCATTGTCACCTAGCAGACTACCATACCATTTTAGTACAGATTCACATATGTTGGATGCATTAGCGTTATCACCAACATTATCGCCCAGTAGTCCGATACGCATCATAAAACCACATCCTGTGTCATCACCAATTAGAATTCCTTCGCCAACTGCTAGGGCAACTTCTCCATTGAGGAGTGCCCCATCTCCGAATCGAAGACCATCATCACCAACCAAAAGAGATCTTTCACCATCAAACAGAAGACCGTCTTCACCAACCAGGAGAGATCTCTCACCACTCAGACGACAGTCGTCACCAACCAGAAGAGATCTTTCCCCAGCAGTTCGAGATCGTCGACCTTCAACCCCACCTAGATTATCACCCATTAAATCACCAATTTCTAGTCCAAAAATTCACAGAGCCCCATCACCAATCATGTACAGTATGTCATCGCCAAACATAATGTCACATATCAAAAGGCCGTTTCCTGGTAAGAGAGGTAGTGCAGAGGCAGAGTCTATAGGTAGCTATAATACACCTAGAAGTAGCATTATAAGTGTTAGTACCCCACGGAGCAGCATTATAAGTCAAATAGAAGGTTCTCCACCACAGGCTAAATCTGGTGCTGTTGTTACATCATCTCGTAGATCCCAACGAAGATCTAGTTCTACAGCAGCATTGACAGCCTTCGCTGTAGCCACTGCTGGGTCAGTAACATACCCTGGAGACCCACAACCACCACAGGGGCAGCAGCAACAAGTGTCCACCACCACACAACAACCATCAGTTACAATGCCAGTATCCACTCAGCCACAAACACAGGCACCACCACCTCAACCACAAACAACACCAAGAACATCTAGAGCATTCCTACAACCAACAACAGGAACTGGTGATTCCCGTCTACAGATGAAGAGAGAATCTGTGATAAGTACTGCTGCTACAATGAGGGTACTGAACATTGTCAAACACTGGGTCTCCAAGTTTCAGCAGGATTTTGAGAGTGATCCTGAATTAAAGGCAGCCGTGATAGACATGCTAGAAGAGATGGTTTGTAATACGTCACTGTTACCAACAGAGCATAAAGCTGCAGCGTCCATATTACGTACAATCAACAAAGAATCTCAAGAACTCAAGAAAGTAGATCTAGAGAAACTACTGACACCACCAGCGATATCTTCTAAGGATACCTTTGATACTCTGTCAGCTTTAGATATTGCTGAACAGTTGACTTACCTAGACCATAAGATATTTTTAAGTATAAGAAGCGAAGAGTTGTTAGGACAAGCCTGGATGAAACCATCAAAGTCTCATAAAGCACCTCATGTACTTCTTGTCAGTAAAAGATTCAACGAAGTTAGCAGATTGGTTGTGTCTGAAATTGTCAGTCGTCAGAACTTGATGGATAGGGTTGCTTGTATAGAGAAATGGGCAGCGATAGCTGATATATGTAGGTGCATGCACAACTACAATGGAGTTCTACAAATCTGTGCAGCATTTGTGAATAGCTCTGTATACAGACTGAAGAAGACGTGGGAGAAACTATCAAAACAGACAAGGCAAATGATAGAGAGATTACAGAACTTGGTGTCATCTGATGGAAGATTTAAAAATATGAGAGATGCATTGCACAGATGTGACCCACCTACCATACCTTATTTGGGAATGTATTTGACAGACTTGTCATTTATAGAGGAAGGCACACCAGATTATACAGAGGAAAATCTCATTAATTTCTCAAAAATGAGAATGATTGCCCATGTTATACGAGAAATCCGTCTTTTTCAACAGACACCTTATAGGATAGAACACCATCCTAGGAATATGGAAGTTATTTCCAACCCTTTATTTGTAGATATGGTTGGTAGTCAGATACACCAGTCTTAG

Transcript

Bpl_scaf_62428-6.15

TATAGATCCGTCATGCCAGTGTAGACCGCCTACTGGATCGTCTCACTGATCTCAGGTTTCTAAGCATCGACTTCCTGAACACATTCCTGCTGACATATCGTGTGTTCTCCTCTGGAAAAGTGGTGCTGGAAGCCCTTAAACGGGTTTACAAGAATCCTGAACAAACCTTGGATTCTAGCCTGTCTTCTTGCCAATCAGCTTCAGAAACTGATATCTATAGTACCAGTCCACCACAACAGTTTACAGAACATCCCCCCACCGACACCAAGCTGTTGCTGAAGCCTCACGTAGATAAACCACGCAGAATCAGTACTGGTGATATGAAACATGAAGTGTCAACAGAGAAACTACCAATTGAACGACCACCTGTGTTAGGATCTGTTACATTCCAAAAATATAGTCGAGATTCAATTGATAGTGACGAAACTGGAAATGAATTACAGAGTTATCTAGCTCCTCCAAAGCAAAAACTGGCTCCAATAGCATCAACAGAAACACTAACTGATCATGATCATGATGCTTGTGTACCATCCATACAAATGGGTGATTCAAGCTCTCTAAAGTTATCATTAGAATCTGGAGAGCTAGGTGAAACTTGTGAATATTCTAGTGATGAAGAGAAGGAATTTTTACACGAATCTCATATTTTTATGTCTGGATCGGAGTCGACAGATACATTTCACACTGCTCGTGATCAGAGTTCTACAACTATTAGCTCAGCGGCAAGCTCTGACACATTGACTCCTGGGACTCCACGAGTAAGTCCTTTTCCATCACCAAGAGTGAGTCCTAGATTTCATATTAGAGGACAAACAAATGGCATTCCAAGAAGTTTAAGTCCTCATGATCGTAGACCATTGTCACCTAGCAGACTACCATACCATTTTAGTACAGATTCACATATGTTGGATGCATTAGCGTTATCACCAACATTATCGCCCAGTAGTCCGATACGCATCATAAAACCACATCCTGTGTCATCACCAATTAGAATTCCTTCGCCAACTGCTAGGGCAACTTCTCCATTGAGGAGTGCCCCATCTCCGAATCGAAGACCATCATCACCAACCAAAAGAGATCTTTCACCATCAAACAGAAGACCGTCTTCACCAACCAGGAGAGATCTCTCACCACTCAGACGACAGTCGTCACCAACCAGAAGAGATCTTTCCCCAGCAGTTCGAGATCGTCGACCTTCAACCCCACCTAGATTATCACCCATTAAATCACCAATTTCTAGTCCAAAAATTCACAGAGCCCCATCACCAATCATGTACAGTATGTCATCGCCAAACATAATGTCACATATCAAAAGGCCGTTTCCTGGTAAGAGAGGTAGTGCAGAGGCAGAGTCTATAGGTAGCTATAATACACCTAGAAGTAGCATTATAAGTGTTAGTACCCCACGGAGCAGCATTATAAGTCAAATAGAAGGTTCTCCACCACAGGCTAAATCTGGTGCTGTTGTTACATCATCTCGTAGATCCCAACGAAGATCTAGTTCTACAGCAGCATTGACAGCCTTCGCTGTAGCCACTGCTGGGTCAGTAACATACCCTGGAGACCCACAACCACCACAGGGGCAGCAGCAACAAGTGTCCACCACCACACAACAACCATCAGTTACAATGCCAGTATCCACTCAGCCACAAACACAGGCACCACCACCTCAACCACAAACAACACCAAGAACATCTAGAGCATTCCTACAACCAACAACAGGAACTGGTGATTCCCGTCTACAGATGAAGAGAGAATCTGTGATAAGTACTGCTGCTACAATGAGGGTACTGAACATTGTCAAACACTGGGTCTCCAAGTTTCAGCAGGATTTTGAGAGTGATCCTGAATTAAAGGCAGCCGTGATAGACATGCTAGAAGAGATGGTTTGTAATACGTCACTGTTACCAACAGAGCATAAAGCTGCAGCGTCCATATTACGTACAATCAACAAAGAATCTCAAGAACTCAAGAAAGTAGATCTAGAGAAACTACTGACACCACCAGCGATATCTTCTAAGGATACCTTTGATACTCTGTCAGCTTTAGATATTGCTGAACAGTTGACTTACCTAGACCATAAGATATTTTTAAGTATAAGAAGCGAAGAGTTGTTAGGACAAGCCTGGATGAAACCATCAAAGTCTCATAAAGCACCTCATGTACTTCTTGTCAGTAAAAGATTCAACGAAGTTAGCAGATTGGTTGTGTCTGAAATTGTCAGTCGTCAGAACTTGATGGATAGGGTTGCTTGTATAGAGAAATGGGCAGCGATAGCTGATATATGTAGGTGCATGCACAACTACAATGGAGTTCTACAAATCTGTGCAGCATTTGTGAATAGCTCTGTATACAGACTGAAGAAGACGTGGGAGAAACTATCAAAACAGACAAGGCAAATGATAGAGAGATTACAGAACTTGGTGTCATCTGATGGAAGATTTAAAAATATGAGAGATGCATTGCACAGATGTGACCCACCTACCATACCTTATTTGGGAATGTATTTGACAGACTTGTCATTTATAGAGGAAGGCACACCAGATTATACAGAGGAAAATCTCATTAATTTCTCAAAAATGAGAATGATTGCCCATGTTATACGAGAAATCCGTCTTTTTCAACAGACACCTTATAGGATAGAACACCATCCTAGGAATATGGAAGTTATTTCCAACCCTTTATTTGTAGATATGGTTGGTAGTCAGATACACCAGTCTTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00617	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR019804	Conserved_site	Ras guanine-nucleotide exchange factor, conserved site	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04349	RASGRF1; Ras-specific guanine nucleotide-releasing factor 1	-	Ras signaling pathway	ko04014	PMID: 28812709
			MAPK signaling pathway	ko04010	PMID: 28812709
			Focal adhesion	ko04510	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_62428-6.15 global RNA-seq network