Gene detail

Detailed information of Bpl_scaf_62428-4.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_62428-4.6	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Bpl_scaf_62428	416315	428350	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_62428-4.6

ATGTTTTTTCTTCTTCAGATTTTACAGGTAACATGTTCTGGAACATGGTATAATTGGGGTACATGGAGTGAATGTTCCTTGTCATGTAATGGTGGATTAGCCAATCGAAGAAGACTGTGTATAGGTGGCAACTGTATTGGGAAAAATATCCAGTATAAAATTTGCAACACTCAGGGGTGTATTCCAAACGATTTATTACCAGAATACGATGCATGCCATTCTCAAAACAGCAAAAAGTTCAATGGTGGAGTTTATAGATGGGTCCCTCGTCAGAAATATCAATGCTCTGTTTACTGTGTAGAAGAATCAAATAAAATTACAAATCTAGTCAGTGTTAAGCTTGCAGATGGCACAAAGTGCAGTAAACAGCCTAACTATCACTGTATAAATGGAAAATGTACTCAACTCGGATGTGATGGAATGGCGGATTCACAGAAAGATTTTGATGACTGTGGCATATGTGGCGGAGACGGTACTTATTGTAAGAGAAATTTGACCAAAGATGATAAACATGTGTTAAGGTGGGAAGTACAGTGGACCTTATGCTCTGTGTCTTGTGGTACAGGATATCAGACATCACGTGCTGTGTGTCGTAACTTGAAATACAGTCAAACTGTTCCAGCTTTTTACTGTGAATATAATAACAAACCTGCAGATAGCTCTCGTGAATGTTCCCTCAACTCCTGTGATCCTCAGTGGAAGACAAGTTCATGGGAAGCCTGTTCGGTTGGATGTGGAGGAGGTGTTCAGAAACGAAAGGTTTTATGTGTTCAAGAAACTGGCAGGTCCAAAACATCTGGACTACCGGATTATCGGTGTCCCGATCCTATACCATCCTCAGAAAGACCTTGTAATACCCAGTTTTGTCCTTCCGCATGGCGAACTGGACAGTGGTCACAGTGTTCTGTGACATGTGGTATAGGACTCCAAATCCGTCCCGTCTACTGTATGAAATCCTTCATCCGTGGCATGCACGTTAATGTCTCTAACAGTGAATGCATGGGACCAAAACCTCAGTTATCTAGACCATGTTCTAAATCACCTTGTTTTCAAATGTTGTCATTTTCACCTCATATTAAACAAGATAATTCTACATTCATTCAACTAAAGAAATCAAAAACAATTCGACTTCGAGTAGGAGTGAAGGCCATTTTGCTACCAAGGCAACCTGTAAAAATTGAATGTCCCGTTGAAAATTTTGAAAAATCTCTTTTATTATGGACTAAAAATAATAGACTTATTTCAACGAATGTTTTCAATAGAGTGTATGTGACTTCTAAAGGTGCACTTAAAATCAGGAGGACAGATCCAACATCTGATGTGGGAACATACACATGTATGGCTGGAATGGAAAGAGCAAGTGTCATATTAGAATTCCAAAGTAAAAGACTTGCAAGGCAAAAAGCAAAAAAAATCAAAATGAAAATACAATCTAAAACTCAAAATGAGATTTTAAACAAACCTCAGGCAGATGTCATTCCTGGTAGTGGACCACAAAATTTAATAGCACTTCCTATTACCAAAAAGCATTCCAAGACAACAATGTATATGAACAGTGATTGGTCCAAATGTTCAAGAACGTGTGGAATTGGATTTCAAACTAGAAAAGTAACATGCAATATCGTAACAGATAAATATATAAAAATAGTACCAGATAATCGATGTCAAGACCAAAAACCAGAAAACCACAGAGTATGTACAGACAACCCATATTGTCCTGTGTGGAGAAGTCATGACTGGTCACAGTGCTCAGTCAACACATGTGAATTTGAAGGTCTAGCTGTACAGACCAGAGAAGTGTACTGTGGTGCTGAGAACAATGTGTCTATAACATTACCAATAAAGAAATGTGATAGAAACAGCCGTCTAGAAACCCGAAGACAGTGTTCTAATGAGAAATGTGTAGCAATATGGAAAACAAGTAAATGGACCAAATGTAAACCCAGCTGTGCTAAGATAGGGAAGAAGACTAGAATACTATCTTGTGTATGGAAACACAACAAGAAATTGGCCAAAGACAATTGTAAAACAAAACCAAAGCCAGAAGTTAGTAAGCTGTGCAAGCCAAAGCATTGTAAAAGAAAATGTTATGACACATCTAGATATTGTAGTTTAACAACAATACTTAAGTTGTGTCGTTATAGAACATTTAAAGATCGATGCTGTGCAACGTGTAGAAACTCAGTTCATACATGA

Transcript

Bpl_scaf_62428-4.6

TTTTATTCTCAATTATTCTTTGATGTTTTTTCTTCTTCAGATTTTACAGGTAACATGTTCTGGAACATGGTATAATTGGGGTACATGGAGTGAATGTTCCTTGTCATGTAATGGTGGATTAGCCAATCGAAGAAGACTGTGTATAGGTGGCAACTGTATTGGGAAAAATATCCAGTATAAAATTTGCAACACTCAGGGGTGTATTCCAAACGATTTATTACCAGAATACGATGCATGCCATTCTCAAAACAGCAAAAAGTTCAATGGTGGAGTTTATAGATGGGTCCCTCGTCAGAAATATCAATGCTCTGTTTACTGTGTAGAAGAATCAAATAAAATTACAAATCTAGTCAGTGTTAAGCTTGCAGATGGCACAAAGTGCAGTAAACAGCCTAACTATCACTGTATAAATGGAAAATGTACTCAACTCGGATGTGATGGAATGGCGGATTCACAGAAAGATTTTGATGACTGTGGCATATGTGGCGGAGACGGTACTTATTGTAAGAGAAATTTGACCAAAGATGATAAACATGTGTTAAGGTGGGAAGTACAGTGGACCTTATGCTCTGTGTCTTGTGGTACAGGATATCAGACATCACGTGCTGTGTGTCGTAACTTGAAATACAGTCAAACTGTTCCAGCTTTTTACTGTGAATATAATAACAAACCTGCAGATAGCTCTCGTGAATGTTCCCTCAACTCCTGTGATCCTCAGTGGAAGACAAGTTCATGGGAAGCCTGTTCGGTTGGATGTGGAGGAGGTGTTCAGAAACGAAAGGTTTTATGTGTTCAAGAAACTGGCAGGTCCAAAACATCTGGACTACCGGATTATCGGTGTCCCGATCCTATACCATCCTCAGAAAGACCTTGTAATACCCAGTTTTGTCCTTCCGCATGGCGAACTGGACAGTGGTCACAGTGTTCTGTGACATGTGGTATAGGACTCCAAATCCGTCCCGTCTACTGTATGAAATCCTTCATCCGTGGCATGCACGTTAATGTCTCTAACAGTGAATGCATGGGACCAAAACCTCAGTTATCTAGACCATGTTCTAAATCACCTTGTTTTCAAATGTTGTCATTTTCACCTCATATTAAACAAGATAATTCTACATTCATTCAACTAAAGAAATCAAAAACAATTCGACTTCGAGTAGGAGTGAAGGCCATTTTGCTACCAAGGCAACCTGTAAAAATTGAATGTCCCGTTGAAAATTTTGAAAAATCTCTTTTATTATGGACTAAAAATAATAGACTTATTTCAACGAATGTTTTCAATAGAGTGTATGTGACTTCTAAAGGTGCACTTAAAATCAGGAGGACAGATCCAACATCTGATGTGGGAACATACACATGTATGGCTGGAATGGAAAGAGCAAGTGTCATATTAGAATTCCAAAGTAAAAGACTTGCAAGGCAAAAAGCAAAAAAAATCAAAATGAAAATACAATCTAAAACTCAAAATGAGATTTTAAACAAACCTCAGGCAGATGTCATTCCTGGTAGTGGACCACAAAATTTAATAGCACTTCCTATTACCAAAAAGCATTCCAAGACAACAATGTATATGAACAGTGATTGGTCCAAATGTTCAAGAACGTGTGGAATTGGATTTCAAACTAGAAAAGTAACATGCAATATCGTAACAGATAAATATATAAAAATAGTACCAGATAATCGATGTCAAGACCAAAAACCAGAAAACCACAGAGTATGTACAGACAACCCATATTGTCCTGTGTGGAGAAGTCATGACTGGTCACAGTGCTCAGTCAACACATGTGAATTTGAAGGTCTAGCTGTACAGACCAGAGAAGTGTACTGTGGTGCTGAGAACAATGTGTCTATAACATTACCAATAAAGAAATGTGATAGAAACAGCCGTCTAGAAACCCGAAGACAGTGTTCTAATGAGAAATGTGTAGCAATATGGAAAACAAGTAAATGGACCAAATGTAAACCCAGCTGTGCTAAGATAGGGAAGAAGACTAGAATACTATCTTGTGTATGGAAACACAACAAGAAATTGGCCAAAGACAATTGTAAAACAAAACCAAAGCCAGAAGTTAGTAAGCTGTGCAAGCCAAAGCATTGTAAAAGAAAATGTTATGACACATCTAGATATTGTAGTTTAACAACAATACTTAAGTTGTGTCGTTATAGAACATTTAAAGATCGATGCTGTGCAACGTGTAGAAACTCAGTTCATACATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF19030	TSP1_ADAMTS	Thrombospondin type 1 domain	Domain	Interproscan
PF19236	ADAMTS_CR_3	ADAMTS cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR010909	Domain	PLAC	Interproscan
IPR013273	Family	ADAMTS/ADAMTS-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR045371	Domain	ADAMTS/ADAMTS-like, cysteine-rich domain 3	Interproscan
IPR050439	Family	ADAMTS and ADAMTS-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030198	Biological Process	extracellular matrix organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_62428-4.6 global RNA-seq network