| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_61985-4.4 | TRNA PSEUDOURIDINE SYNTHASE D | Bpl_scaf_61985 | 464399 | 481663 | + |
| CDS | |||||
| Bpl_scaf_61985-4.4 | |||||
| Transcript |
| Bpl_scaf_61985-4.4 |
| Protein |
| Bpl_scaf_61985-4.4 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01142 | TruD | tRNA pseudouridine synthase D (TruD) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001656 | Family | Pseudouridine synthase, TruD | Interproscan |
| IPR011760 | Domain | Pseudouridine synthase, TruD, insertion domain | Interproscan |
| IPR020103 | Homologous_superfamily | Pseudouridine synthase, catalytic domain superfamily | Interproscan |
| IPR042214 | Homologous_superfamily | Pseudouridine synthase, TruD, catalytic domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13326 | TRNA PSEUDOURIDINE SYNTHASE D | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0001522 | Biological Process | pseudouridine synthesis | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0009451 | Biological Process | RNA modification | Interproscan |
| GO:0009982 | Molecular Function | pseudouridine synthase activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K06176 | truD, PUS7; tRNA pseudouridine13 synthase | EC:5.4.99.27 | Transfer RNA biogenesis | ko03016 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_61985-4.4 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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