| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_61985-2.9 | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER | Bpl_scaf_61985 | 234658 | 267457 | + |
| CDS | |||||
| Bpl_scaf_61985-2.9 | |||||
| Transcript |
| Bpl_scaf_61985-2.9 |
| Protein |
| Bpl_scaf_61985-2.9 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02463 | SMC_N | RecF/RecN/SMC N terminal domain | Domain | Interproscan |
| PF06470 | SMC_hinge | SMC proteins Flexible Hinge Domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003395 | Domain | RecF/RecN/SMC, N-terminal | Interproscan |
| IPR010935 | Domain | SMCs flexible hinge | Interproscan |
| IPR024704 | Family | Structural maintenance of chromosomes protein | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR028468 | Domain | Smc1, ATP-binding cassette domain | Interproscan |
| IPR036277 | Homologous_superfamily | SMCs flexible hinge superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18937 | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005694 | Cellular Component | chromosome | Interproscan |
| GO:0007062 | Biological Process | sister chromatid cohesion | Interproscan |
| GO:0008278 | Cellular Component | cohesin complex | Interproscan |
| GO:0016887 | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0051276 | Biological Process | chromosome organization | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K06636 | SMC1; structural maintenance of chromosome 1 | - | Cell cycle | ko04110 | PMID: 28812709 |
| Cell cycle - yeast | ko04111 | PMID: 28812709 | |||
| Meiosis - yeast | ko04113 | PMID: 28812709 | |||
| Oocyte meiosis | ko04114 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_61985-2.9 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
