Gene detail

Detailed information of Bpl_scaf_61985-10.14 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_61985-10.14	RNA-BINDING PROTEIN	Bpl_scaf_61985	1014184	1036367	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_61985-10.14

ATGGAAGTACAAAACTACACCAATGAAAATTTCACTGACTACAGCAATGCCAATGGTGCTTATAATAATTACACAGAAGAGGGAGAATATGAAGAACCGTGTGTTCCTGGTGAAGATTACATAGAAGCGGAAGCTACACAGGAGGAACAAGGGCAGAGTTCACCTTCTTCAAGGGAAAAGGAGAGAGACAGAGAGAGGAGAAGGAGGCATAGAGATAGAAAGGACAGAAGGAGTGGTGACAAAGACAGACACGAGAGAAGGAGAGATTCAAGAGACCGTGACAGGGACAGAAGAGATCGAGACAGAAGACATCGTGATAGAGACAGGAGTTCTCATAGAGAAGACAGATTTGATGATGATAATGGATCAAATGATGGAGATGGTTATAGAGATTACAGAGGAGAAGATAGAGGGGGAGAGAAATGGATGACAGACACACCTACCAATACAATCCTTCTTAGAGGATTACCTCAGACCATAGAGGAAACAGATATTCGTGGGGAGTTGATGATGTTTGGATCTCCTGTTAAAGATGTACGATTGATGAGAAGAAGTTCTGGTGCTTCCCGAGGGTTTGCTTTTGTGGAGTTTCAAAGCATAGCAGATGCACAGCGCTGGATGGATCAGAATCAGGGAAGACTTAAGTTGCAGAACCAGTTCAATGTAGGCATGCATTATAGTACACCAAAAACTGGACCAGAGAAAAATGTTCACAAAACAGACTGGACCTGTGGAAAGTGTGGCGTCCATAATTTCAAGAGAAGGGACCATTGTTTCAAGTGCAATTTATCTAGAGAAGAATCTGATAGGAAAAATGAAGCTGATGGCTTTGACCAAGTTGGAAATAATCCTTGTAATACATTAATATTCCGTGGTTTGGATGCTTTGACTACAGAAGATAATCTGATCCGTGCCTTGTCAACAGTTAGGATATCAGACATTAAAAAAATACAAGTCATGAGGGATGATGCAACAAGTATTTCTAGAGGCTATGGTTTCCTTGAATTGGGATCTGTGGCAGAAGCTACACAGTTACTGAGTTGTCTGTCACAAATTTCCTTTGAAGTTGATGGCAAACTCATCCTTGTCAATTTTGCAAAGAACACATTTACTACAGTGATGGCAACACTTGCTGCACATTATGCTGGGGAGCAGCAAGGAACATGGGATTATAATCAACAGAGTGGTTATTATGATGGGTACTACCAGCAGGGATCAGAGTATGAACAATCTCAGCAGTTTGGACAGTATTTTGATGGACAGAACTACGACTACTCACAATACTATGAGTCAGGCTTTCAGCAACAGACCTCTGTTCCTTCACAACCTACACAAACTGATTCAACAAATGCAGCAGCAGCCGTTGCTCAAGCAGCCATACAACAAGCCAATGCCGTCAAACATCTGGTAAATAAACAAGTGAAAGGTCTAGTTCCTGAAATTCCAGTAGCTGCTCAAGATCAGTCGCAGTCAAATCAGGAATATCCTGTATATCCTCCACCAGATGTATCACAGTACCAGTATGAAGAAACATCGGGATACTATTATGACCCATCTACTGGACTATATTATGATGCTAATACACAATATTATTACAATGCCACATCTGGTCAGTTTCTATACTGGGATGCAGAAAAGTTTACATATCTACCTGCACCCAATGGTGATGAAAACTCTGCCAACTCTAACGATGACCAGAAGAAAGAACCTAAAGATAAGAAAGAGAAAGTCAAAGTGGCAAAGAAAATTGCTAAGGATATGGAAAAATGGGCAAAGACATTAAATGCACAGAAGGAAACAATAAAGAACTTTAATAAAACATTCCAGACAATATCTGGTTCCAGATCAGAGGAAAAGAAAGAATCGGCGACAGCTGATGCTGGTTTTGCTATTCTGGAGATGAGTACAAAAGGTACCTTAGTAGAGGACAAAAAATTGATGCCACCACCACCTTTACTTGGTGGTATAGGAAGTAAATCTCCAGCATCAGCATCACAAGCCTCTAATATCCCAGGTCTAGTAGCATCGTATGGTGGGGACAGTGATTCAGATGGAGAAGACGATTCTCAAGGGGGTGTTGTTGACGAGTCTAAACTGACAGATTGGAATAAACTAGCATGTTTACTGTGTAAACGACAATTTCAAACCAAGGAAATATTGGTCAAACATCAACAAATGTCTGGATTACATAAAGAAAATTTAGAAAAACTTTATAAAGCAAAGGGAGGAAATCAGTCAGGTGGAAGTGATGCAGAAAAACTGCAGTACCGAGACAGAGCTAAAGAAAGGAGAGAAAAGTATGGAATACCACCACCTCCAGAACCAAAAAGCAAAAGACCAGAAGAACCTGTGGTTTTTGAAGAACCAACTAAAACTGGCATTGGTGGAGAAAATATTGGCAACAAATTGTTACAGAAAATGGGCTGGTCTGCTGGTCAAGGTTTAGGAAAGAAAGGACAGGGCATTGTGGCTCCTATAACGACACAAAGAAGGAATGCCACAGCTGGTTTAGGAATGAGAGGTGCTAGTAATGTTGCTGCTGGTGGTGATTCTTATAAAGAAGCTGCCAAGAAGAACATCTTTGCTCGTTACCAGGAAACAGATTGA

Transcript

Bpl_scaf_61985-10.14

GTTTCTCTACAGTCTACGTGTGAAGAACGGACAAAAGTGTTCGGCTCTTAAGTTAGTGTTCGGCGGAAGGTTAATTCGCCCTATTGGAAAAAATCAGTTCGTTTCGCTTAATAGTCTGATAATTACGTATAGTGATCATGCGCAGTCATAAATTATCAACACAGAAATGAATAAGACTGGTTACTTGACTAGATGTTTCACGAATATAACACATGCTCTTTTGTTATAGACAGGGAACCAGCCTAAAATTTATCTTTACAACGGCCATCTTGAAAACGCAAAAAGATGGAAGTACAAAACTACACCAATGAAAATTTCACTGACTACAGCAATGCCAATGGTGCTTATAATAATTACACAGAAGAGGGAGAATATGAAGAACCGTGTGTTCCTGGTGAAGATTACATAGAAGCGGAAGCTACACAGGAGGAACAAGGGCAGAGTTCACCTTCTTCAAGGGAAAAGGAGAGAGACAGAGAGAGGAGAAGGAGGCATAGAGATAGAAAGGACAGAAGGAGTGGTGACAAAGACAGACACGAGAGAAGGAGAGATTCAAGAGACCGTGACAGGGACAGAAGAGATCGAGACAGAAGACATCGTGATAGAGACAGGAGTTCTCATAGAGAAGACAGATTTGATGATGATAATGGATCAAATGATGGAGATGGTTATAGAGATTACAGAGGAGAAGATAGAGGGGGAGAGAAATGGATGACAGACACACCTACCAATACAATCCTTCTTAGAGGATTACCTCAGACCATAGAGGAAACAGATATTCGTGGGGAGTTGATGATGTTTGGATCTCCTGTTAAAGATGTACGATTGATGAGAAGAAGTTCTGGTGCTTCCCGAGGGTTTGCTTTTGTGGAGTTTCAAAGCATAGCAGATGCACAGCGCTGGATGGATCAGAATCAGGGAAGACTTAAGTTGCAGAACCAGTTCAATGTAGGCATGCATTATAGTACACCAAAAACTGGACCAGAGAAAAATGTTCACAAAACAGACTGGACCTGTGGAAAGTGTGGCGTCCATAATTTCAAGAGAAGGGACCATTGTTTCAAGTGCAATTTATCTAGAGAAGAATCTGATAGGAAAAATGAAGCTGATGGCTTTGACCAAGTTGGAAATAATCCTTGTAATACATTAATATTCCGTGGTTTGGATGCTTTGACTACAGAAGATAATCTGATCCGTGCCTTGTCAACAGTTAGGATATCAGACATTAAAAAAATACAAGTCATGAGGGATGATGCAACAAGTATTTCTAGAGGCTATGGTTTCCTTGAATTGGGATCTGTGGCAGAAGCTACACAGTTACTGAGTTGTCTGTCACAAATTTCCTTTGAAGTTGATGGCAAACTCATCCTTGTCAATTTTGCAAAGAACACATTTACTACAGTGATGGCAACACTTGCTGCACATTATGCTGGGGAGCAGCAAGGAACATGGGATTATAATCAACAGAGTGGTTATTATGATGGGTACTACCAGCAGGGATCAGAGTATGAACAATCTCAGCAGTTTGGACAGTATTTTGATGGACAGAACTACGACTACTCACAATACTATGAGTCAGGCTTTCAGCAACAGACCTCTGTTCCTTCACAACCTACACAAACTGATTCAACAAATGCAGCAGCAGCCGTTGCTCAAGCAGCCATACAACAAGCCAATGCCGTCAAACATCTGGTAAATAAACAAGTGAAAGGTCTAGTTCCTGAAATTCCAGTAGCTGCTCAAGATCAGTCGCAGTCAAATCAGGAATATCCTGTATATCCTCCACCAGATGTATCACAGTACCAGTATGAAGAAACATCGGGATACTATTATGACCCATCTACTGGACTATATTATGATGCTAATACACAATATTATTACAATGCCACATCTGGTCAGTTTCTATACTGGGATGCAGAAAAGTTTACATATCTACCTGCACCCAATGGTGATGAAAACTCTGCCAACTCTAACGATGACCAGAAGAAAGAACCTAAAGATAAGAAAGAGAAAGTCAAAGTGGCAAAGAAAATTGCTAAGGATATGGAAAAATGGGCAAAGACATTAAATGCACAGAAGGAAACAATAAAGAACTTTAATAAAACATTCCAGACAATATCTGGTTCCAGATCAGAGGAAAAGAAAGAATCGGCGACAGCTGATGCTGGTTTTGCTATTCTGGAGATGAGTACAAAAGGTACCTTAGTAGAGGACAAAAAATTGATGCCACCACCACCTTTACTTGGTGGTATAGGAAGTAAATCTCCAGCATCAGCATCACAAGCCTCTAATATCCCAGGTCTAGTAGCATCGTATGGTGGGGACAGTGATTCAGATGGAGAAGACGATTCTCAAGGGGGTGTTGTTGACGAGTCTAAACTGACAGATTGGAATAAACTAGCATGTTTACTGTGTAAACGACAATTTCAAACCAAGGAAATATTGGTCAAACATCAACAAATGTCTGGATTACATAAAGAAAATTTAGAAAAACTTTATAAAGCAAAGGGAGGAAATCAGTCAGGTGGAAGTGATGCAGAAAAACTGCAGTACCGAGACAGAGCTAAAGAAAGGAGAGAAAAGTATGGAATACCACCACCTCCAGAACCAAAAAGCAAAAGACCAGAAGAACCTGTGGTTTTTGAAGAACCAACTAAAACTGGCATTGGTGGAGAAAATATTGGCAACAAATTGTTACAGAAAATGGGCTGGTCTGCTGGTCAAGGTTTAGGAAAGAAAGGACAGGGCATTGTGGCTCCTATAACGACACAAAGAAGGAATGCCACAGCTGGTTTAGGAATGAGAGGTGCTAGTAATGTTGCTGCTGGTGGTGATTCTTATAAAGAAGCTGCCAAGAAGAACATCTTTGCTCGTTACCAGGAAACAGATTGATATTTAGAAACAATTCTATTTCAAGACCTAATTGCAATATTTTGTATGCAGTTTTTTTTAGGCACATTTGAAAAAAAAAGCCATGCTGACTAAGATTTGTGAGAAAATGTTTTAAATTGGTTCCTTGAGTTTATATTCCACACTGGGAGTATAATCAATTTAACTTGCATGTACTTACTATTAGTCAGCTTAATGACTGGGCTATTCGAATCGGACATAAGGAGAACTTGGCAGTAAATAACAATTGGCATTTTGCATACATTGTATGCTATTTAAATAGATTTCTTGTTGATATGAAGGTTTAATTCAGTGCATCACTGTATAATGTAATAAAATGAGATATGTGTAAAATGCATGCATCACAAATTATTCATTGTAAAATAAGACAACAATGTAATTATTTTTGACATCTTTTGTGTACACATGTGTAAATTGGACTGGAATATTATTGTTTATATAGTAAACTAAATAAAAAAAAAAATTAAAATGTAAAGATTATGCTATTCATCTACCATTTGAAATGTAAATTTGAATCGTAACGTTTGTTTATCTAACATTGTGGTACTTGTGTACAAACTTGTAGTGTTTTCAGAATACATTAAAAAAGCAAATATGTGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01585	G-patch	G-patch domain	Family	Interproscan
PF17780	OCRE	OCRE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467	Domain	G-patch domain	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR041591	Domain	OCRE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13948	RNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13094	RBM5_10; RNA-binding protein 5/10	-	Spliceosome	ko03041	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_61985-10.14 global RNA-seq network