Gene detail

Detailed information of Bpl_scaf_61552-0.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_61552-0.10	WD40 REPEAT PROTEIN	Bpl_scaf_61552	49329	58567	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_61552-0.10

AATGAAGTAAATGCCATTAAATGGGATCCTCAAGGACAGTTGTTAGCTTCTTGTTCAGATGATATGACATTAAAGATATGGAGTATGAGACAAGATCACTGTGTACATGATTTACAGGCTCACAGTAAAGAGATCTACACAATAAAATGGAGTCCCACAGGACCAGGAACAAATAACCCAAATGTCCCACTTATATTATCTAGGTTATGGGAAGTAGAACGAGGAACATGTATTCATACATTAACAAAACATCAGGAACCTGTATATAGTGTAGCGTTTAGTCCTGATGGCAAATATTTAGCCAGTGGTTCTTTTGATAAATGTGTTCATATCTGGAATGTACAGAGCGGGTCATTAGTACACAGCTATAGAGGTACGGGAGGAATATTTGAAGTGTGTTGGAATCACAGGGGTGACAAAGTGGGAGCTAGTGCGTCAGATGGCTCAGTCTTTGTGTTGGATTTGCGGAAATGAAGGCATGTGACCTTTATTTAAAGCTACCTCTAAAAATTCTCACTAGACAGCCATCAAATGGTTTTTAAAAAAGTGCTAGCAGAGGTTCAACTTATTATTAGAACTACTGAAGTGAAAGGCTGTGATATATATATATATAACTTTCCTGAGGGAACCTCAAGAGTACTACCGTCAGAGTTAACTAGAGGAGGAGGTATGGTGGTGAGGAAGGGGAGGAGAGCTTCCAGATATCCAACATCAAGAGAAAAATATGTGCAATAATCAGGCATAAAAAAGGAATCAAGATTTGACCTTTTGTCATCTAATGGTTATATCTGTTTGAAATTTTGCATGTAAACAGGAATTTTTCATTTCAACGGACTGGGTTTGATGTTCTATATTAGAACCAAGTCTTAACAGTGAAACCAATCTAAGCTGTTTAAGTTTTAAAATGGACAGGAAAAACAAAACAATGTTTTAAGATGGAAAAGATGAAAATTATGATTTTCCTTCAATGAAAAACTCCTCTTTTTTTTAGAATATATTTGTTATCAATCAAAAAAGGGATGCTGATTGTGTTTCAAAAGAATAATATCAAAAAAAGGGTTACGTTTGAGGTGTTGGATTCATGGTGCCATGTTAAAGTTGTATTGGCAGTAAAAAATAATGTAAAAATAGGGCACACTTGTTGTCAAGTATTGTGTTACATGTTGTTTTTAGAAAATTCCCATCTTGCTCATTATTGTCAAGAAGATCTGATTGTAAAATATGGCATTGTTTATTTATTGTAAATTCACAAATTAATGTGAAAAATAGGATGAGACCAAAGATCATGTTATTCAAACCTTGCATTTATAAAAATGTTTTGGCAATTTTCACTTTTGTCATTATTAGACTTTTCCCTTGAAAAATAGTCAGTTGTAAAGATGTCCTACACAAACCTACTTTTTGTTTTAGCCAAAATTGTTCTAACTTTGTCAGATTATTGGGAATGATGGTCTGAGGATCTGTTTTCTTTTTGACAATTTTGATTTTTGTAGTTCTGATGAAAAAATTATCTGTTGTAAACATGTTGCATGTTTACTCAAGTCTACCTTGACTGATTTTCTTACTCAATTAGAATATATACAGGAGCCTGACTAGGTGTATGAATCCTATTTATAAATGCACACATTGATTTGTGAATTTATAGTATATCATCTAGATTTGTTAGAAAAACAGAAATATGGTGTTTTAAGAAAGAAAAAACATAATGTTGTGAAAACAAGGTACATTTACTACAGAAAGAGTATTAAAATATAATTTTTATGGTATAAATGGTAATGGATGCAGGGGTGTGGAATTGCCATGCCCGACTCGTCCGACTCGTACATAGAACCTGCCGGACAAGTAGATTTTCCTGGCTAACTTGTCCGGGGACAAGTAAAAATAAAACAAATAAAAATATTTTCTAATTAAAGTACTCTGGGAAGACAATTCCTCAAATGATATTATATCGTAAATATTGACGGTTATATAGATAAATGTTTTTGTTTTTTATTGGAAACGATCACGTTAGTGTTCCGAAAGCAGCTAAAAATAACCAGAATTGTACAAGTTCTAAGTTTAGTATTACGACCTGACTGCAATGATAATTGTACTACATTTACTTAACGATAACCGAGACCGTGTAACAGGTTTTTACTGGAGTTCCGAATGTGACGTTTCCTTGCTTGTCCATAGCTTTTCATAAACAAACAGGGCCTTACATCCGTGAACGTATAATACAAATCGGGTTGCAGTCATTACAATGGACAAATATTTGATAATAAAAAAAAGACTGGGAATGATTCTGGCCACAATGAACATCACGAGAAAGTTAAACGCAAAACTCTAGCGGAAAAGGACGCAAAATGTGAAGAAAAAGACCGAAGTGGCTAGCCGATTTCTCATGTTTACTGCTGGATTCTGATGGTGTCTCATATTGAAATATCTGCTGACAAGAAATCATTAATGTTTATTGGCAAAATCGTGGACAGAATGGATACCTATCTTCCCACCAGTCATCTGCAAAGTATGAAGACACCACTAAAACTAAATACTAGTACATGACTGTTTTGATTGATAAATCCATTGTCAAGGTTAATCAAAATGAACTTCATTGATATGAGATTTTTTTTCAACACAGCTTATTCTGTATCTAAAAACAACCAGCTATTATTCTCTGACTGCATATTCCTATTTGAAATCCAAATTAAAATGGCCTTCATTTGGGCAGTGATCACTTAGGCAGGGATGTTTGTGTTAACTTTATTAAAACTACATTTGTATATTTCAAATTTTACGCAATGATGTAATAGACAATATAAACAAGTTCAATTTAGCAACTGTGTTTATAAGTATCAAATGTTTGTACAAAAAACAGGACAAGTAGGATTTTGTCCTGACAAGTAACTTTTTTCAGATGACTTGCCCGGGGACAAGTAGAACATTTCAGTATTTCCACACCCCTGGGATGTTTGCATTGAATTTGAATACAGAAATTGAAAATTGACAATAATAAACAACATATTTGATTTTTTTAAAGTTTTTTTTCTCAAATATTGTATTAGTACTTGAATATTGGCTCAAGTAAATAATTAATTATTATGGTGATCAAATGATATTTTTATTTTTGCACTGAAATAATGCACTTGCCATATTTGTAATACTCAAAATTTAGAACAACATTCTGTTAATAGCTGACATATTTTTTCTCATTCTTTATATGCATTTTCTCCATAATTTTAACAACAGAAAAAAATCTTTTGTGGCATCCATCACATATATATTATAGAATTTATATGTTCTTAATATAGTAATACAGTATTCCCCGACTTATAAGCCCACTTATTCTGCAGTGAACAATTGGCCTTAGTGCCTCTGAGGTCTGGCCTGATAACAGAGGTGGCCTATGCAGGGCTTTCAATATTTTTCAAGTCGACCAGTACTTCACTATTTACAGGCGGTACTTATTATTAAAATTTGAACAATTTTCATGAATAACTTATACAACACTTTAAAACCAGGAGGTACCAAAGACCATGTTAGGCAGGTAAAAGTACCTGGTACCACCTTTTATTTAAAGGCCTGTGTATTGTGGAGTGTCCTTATAAGAGGGGGGAATA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR045183	Family	F-box-like/WD repeat-containing protein Ebi-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22846	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000118	Cellular Component	histone deacetylase complex	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04508	TBL1; transducin (beta)-like 1	-	MAPK signaling pathway - fly	ko04013	PMID: 28812709
K04508	TBL1; transducin (beta)-like 1	-	Wnt signaling pathway	ko04310	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_61552-0.10 global RNA-seq network