Gene detail

Detailed information of Bpl_scaf_61421-1.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_61421-1.9	ATP-DEPENDENT RNA HELICASE DBP3	Bpl_scaf_61421	84717	126907	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_61421-1.9

ATGGAAACAGATCATAAAAGAGAAGACAGAAAACGTCAACATTCTCCAGATACTGATCTTAAAAAAGAGGAGAAAAAGAGGGCTAGGTCAAGATCTAGGTCACGAGAAAGGAAAAGTAAAAGGAAAGATCGTGAAAGACAGCAACGTACATGGAGACGAAAAAAGCGTGCCGTCGACTCGAGGAGAAGTATATGTGATAAAAATTTAAAGTTGAGTCATTTATTAGAGGAATTACTGGCCAAGAAAAAAGCAGAGGAGGAAGCTCTCAGTAAAGTAAGTGTTAATTATAGGAGTGTTCCATTGGTGTACCTTATCATAGCTTATGATGTTGATACTGATCCAGAATTCATCCTCAAAGCTCTATTTCCCAAATTTTTATCGAAAGAAGAAAGAGCCGCTGAGGCTTTGAAGAAAAGACAAGAACAAGTTGAAGAACAGAGAAAGAAAATGGAAGAAGAAAAGAAGAAACAACTGGAATTTCTGAGTGCAGGGAAAGAATGGGGTGTAGATGATAGAAGAGACAGAATGTTCTACCGTGACAGAGGAATGGACAGATTTGACAGAGATCGTGATCGAGAACGGGACAGAGAAAGAGAAAGACGGGAACGTGAAAGGGAAAGAAACAAAGATACAGATGATAAAGACAAAGATAAAGTTATAGAAGAAAAAGAGAAAGACAAAGTAGTGGAGGCTATCAAGGACAGATATTTAGGTATTACAAAGAAGAAGAGGAGAATTCGTCGATTAAACGACAGAAAATTTGTCTTTGATTGGGATGCTGGAGATGACACATCTACAGACTATAACCCTCTATACAAAGATAAACATCAGGTTCAGTTCTATGGCAGAGGTTATATTGCTGGTATAGATCTAAAGTCTCAGAAGAAGGAGCAGTCAATGTTTTATGGAGATCTGCTAGAAAAACGTAGAACTGAAGCTGAGAAAGAACAAGAAAAGTTTGAACCAACACCTATCCAGAGACAGGCTATCCCTATAGGGTTACAGAATAGAGATATTATTGGTGTGGCTCAGACTGGCAGTGGGAAGACAGCGGCCTTCCTTATACCATTGTTAAAGTGGATTCAGAGTTTACCCAAGATTGAAAGAATGGAAGATGTGGACCAGGGACCGTATGCTATTATTTTGTCACCTACTCGAGAATTAGCCCAGCAGATAGAGGAAGAAACAATCAAGTTTGCTCAGAACTTAAGTATCAGAACTGTAGCTGTTATTGGTGGTCTATCTCGGGAGGATCAGGGATTCAAACTACGACAGGGATGTGAGATTGTCATAGCAACACCTGGTCGTCTTATTGATGTTTTAGAGAACAGATATCTGGTATTAAACCAGTGTACATATGTAGTTATGGATGAGGCTGATAAAATGTTAAATATGGGATTTGAACCAGATGTACAGAAAATACTGAGTTATCTTCCAGCTTCTAATCTGAAACCAGATACAGATGATGCTGAAGATAGCGAGAAACTTATGAGGAATTATAGTACAAAGAAAAAATACAGACAGACTGTGATGTTTACGGCTACTATGCCTCCAGCAGTAGAAAGATTGGCTAAGAATTATTTAAGACGACCAGCTGTTGTATATATAGGATCCGCTGGTAAACCTGCAGAGAAGACAGAACAAATTGTTTACCTGGTCTCTGACAATGAAAAAAGGAAGAAGTTGTTGGCCATCCTGCAGGACCGTTTAGAACCACCTATTATTATCTTTGTTAACCAAAAGAAAGGTGTTGACGTGTTGGCTAAATCTCTTGAAAAGATGGGGTTCAACGCTACAACATTGCATGGTGGTAAGGGTCAGGAACAGAGAGAGTTTGCCTTGGCCAGTTTGAAGAATGGATCAAAGGATATCCTGGTGGCTACAGATGTAGCTGGTCGTGGTATAGATATTAAAGACGTCTCTCTTGTCATCAATTATGACATGGCTAAGTCAATTGAAGATTATACTCATCGTATAGGAAGAACAGGTCGTGCTGGCAAGACTGGTGTAGCCATATCATTCTTAACAAAAGATGATGCGGCCGTTTACTATGATCTAAAACAATGTTTATTAAACAGTGCTGTGTCACATTGTCCTCCTGAACTGGCAAGTCATCCAGACGCTCAACATAAACCAGGAACTGTTGTACAGAAAAAGAGGAAAGACGAAACTATATTCTTAAGTTAA

Transcript

Bpl_scaf_61421-1.9

GAATTCCTAACACATCCAACATGTCTGCTTCCATGAATGCGTTCCCCGGATTTAAACGTTAGCAGAACGATTGGAATTGCTGAAGTGACATAGTAGAAGAAATATATAGTCTTTCAGAATTGTTATTTTCAAAGGGTTTAAGAGCAGATAATGGAAACAGATCATAAAAGAGAAGACAGAAAACGTCAACATTCTCCAGATACTGATCTTAAAAAAGAGGAGAAAAAGAGGGCTAGGTCAAGATCTAGGTCACGAGAAAGGAAAAGTAAAAGGAAAGATCGTGAAAGACAGCAACGTACATGGAGACGAAAAAAGCGTGCCGTCGACTCGAGGAGAAGTATATGTGATAAAAATTTAAAGTTGAGTCATTTATTAGAGGAATTACTGGCCAAGAAAAAAGCAGAGGAGGAAGCTCTCAGTAAAGTAAGTGTTAATTATAGGAGTGTTCCATTGGTGTACCTTATCATAGCTTATGATGTTGATACTGATCCAGAATTCATCCTCAAAGCTCTATTTCCCAAATTTTTATCGAAAGAAGAAAGAGCCGCTGAGGCTTTGAAGAAAAGACAAGAACAAGTTGAAGAACAGAGAAAGAAAATGGAAGAAGAAAAGAAGAAACAACTGGAATTTCTGAGTGCAGGGAAAGAATGGGGTGTAGATGATAGAAGAGACAGAATGTTCTACCGTGACAGAGGAATGGACAGATTTGACAGAGATCGTGATCGAGAACGGGACAGAGAAAGAGAAAGACGGGAACGTGAAAGGGAAAGAAACAAAGATACAGATGATAAAGACAAAGATAAAGTTATAGAAGAAAAAGAGAAAGACAAAGTAGTGGAGGCTATCAAGGACAGATATTTAGGTATTACAAAGAAGAAGAGGAGAATTCGTCGATTAAACGACAGAAAATTTGTCTTTGATTGGGATGCTGGAGATGACACATCTACAGACTATAACCCTCTATACAAAGATAAACATCAGGTTCAGTTCTATGGCAGAGGTTATATTGCTGGTATAGATCTAAAGTCTCAGAAGAAGGAGCAGTCAATGTTTTATGGAGATCTGCTAGAAAAACGTAGAACTGAAGCTGAGAAAGAACAAGAAAAGTTTGAACCAACACCTATCCAGAGACAGGCTATCCCTATAGGGTTACAGAATAGAGATATTATTGGTGTGGCTCAGACTGGCAGTGGGAAGACAGCGGCCTTCCTTATACCATTGTTAAAGTGGATTCAGAGTTTACCCAAGATTGAAAGAATGGAAGATGTGGACCAGGGACCGTATGCTATTATTTTGTCACCTACTCGAGAATTAGCCCAGCAGATAGAGGAAGAAACAATCAAGTTTGCTCAGAACTTAAGTATCAGAACTGTAGCTGTTATTGGTGGTCTATCTCGGGAGGATCAGGGATTCAAACTACGACAGGGATGTGAGATTGTCATAGCAACACCTGGTCGTCTTATTGATGTTTTAGAGAACAGATATCTGGTATTAAACCAGTGTACATATGTAGTTATGGATGAGGCTGATAAAATGTTAAATATGGGATTTGAACCAGATGTACAGAAAATACTGAGTTATCTTCCAGCTTCTAATCTGAAACCAGATACAGATGATGCTGAAGATAGCGAGAAACTTATGAGGAATTATAGTACAAAGAAAAAATACAGACAGACTGTGATGTTTACGGCTACTATGCCTCCAGCAGTAGAAAGATTGGCTAAGAATTATTTAAGACGACCAGCTGTTGTATATATAGGATCCGCTGGTAAACCTGCAGAGAAGACAGAACAAATTGTTTACCTGGTCTCTGACAATGAAAAAAGGAAGAAGTTGTTGGCCATCCTGCAGGACCGTTTAGAACCACCTATTATTATCTTTGTTAACCAAAAGAAAGGTGTTGACGTGTTGGCTAAATCTCTTGAAAAGATGGGGTTCAACGCTACAACATTGCATGGTGGTAAGGGTCAGGAACAGAGAGAGTTTGCCTTGGCCAGTTTGAAGAATGGATCAAAGGATATCCTGGTGGCTACAGATGTAGCTGGTCGTGGTATAGATATTAAAGACGTCTCTCTTGTCATCAATTATGACATGGCTAAGTCAATTGAAGATTATACTCATCGTATAGGAAGAACAGGTCGTGCTGGCAAGACTGGTGTAGCCATATCATTCTTAACAAAAGATGATGCGGCCGTTTACTATGATCTAAAACAATGTTTATTAAACAGTGCTGTGTCACATTGTCCTCCTGAACTGGCAAGTCATCCAGACGCTCAACATAAACCAGGAACTGTTGTACAGAAAAAGAGGAAAGACGAAACTATATTCTTAAGTTAACCTCAGTATAAGCCATGGACTGTCAAATGTAAAATAAACAGAAAAGGTGGGAACACAAAAAGAGGAAAGACTCCATTGTGAAAATAAGATGAGAAGCAGCAATTTTAAAGTACTGACGAAAAAAAACTTGTTGCATTGAAAAAAATGTCAAAATAAATCATACAGATGTGTTGCGTATTTTCAGTTCGTATACAAATTATTTTTGTCTGCAGTATTTCACATGAAAACAAGATTTAAAGTAATAAATTGTAAGATAGCCTGATATGACATACTCGTAAATAATAAATTGTATGACGACACTACTGTGGAGCTGTGATTAATTAGTTAAAAAGCTGATGACAAGCAACAAAATACAAATGTTCATAATGTAATATACAGTTGAATCTCGTTATCTCGAACCACAGCAGACCGAGAAAAAAATTCTAGCTATCCGTAGTTCGACTAAAGAGGAGTGCAAGAAATCGATGTCCATGAAAGGGGAAGTAACACCATTTGGAATGTTATATCAATTTTCCGACCTCATGATGTTTTTTTTTTTAGTTTTTGATTTCCATATCAGTTGTTTTTAATTTGGTATGTGCATGTTTCTTTTTTAATTTTATTTCCGTTGACACTATCGTCGCATAATTCCTTGTTTTGTTTTGTGTAATGTTGACACTATCGTCGCATACTTCCTTGTTTTGTTTTGTGTAATTTATATGTTATTTTCTTGTGTATTGAAAATCAGTAATGTTTTTATCGTTCATTTACAATGATAAAATAATTAATCAACTAACAACGAACTGTACATAAATGAATAACTTTATTAACAAGATAAGCTCATGTTTATTCATACAAAGGAAACATCATGGCAGACAATACACACATGTTTTTATTTGAAGAATACGAAATATTTAATGAAACGAATGTATCAATGAAACGCATATAAAATATTATAAAATAGGAACAAAATGTATCAAGCACTAATAAAACATATAAAAGCAATTTACTCAGTATAATTAATAATAAGTAGGAATTAATTTCTGAAGATTTATACACGACACAATAGAAGATGTACATGAAATACAATTTCGGCGAAAATTATCTAATTAACATAATCCGTATTTTACTATGACCCAAGCGCCACCTGTTTGATTGCCACATCAAATGATATGGGAAAAGTCGTAAGAATAAATAATTGTTAGTGATTTAATTATCACTTGATTGCTTCATTTAAAATTAAAAACAGCTAGTTTACACATTTCTTTATAATAATAACAACAATTAACAAAATTGATAAAGCTTAATTAACAGAGAAGATGAATGACGCAAGCCATAAATTTGACACTTTGACATCTGTTTATTGAGGTTAATTATCAGTTTGACATAACGAACATTGTTTGCATTTATTTTAATTATTAGTTTGACATAACGAACATGTTTTGCATTGATTTTCACCTTTGGGACTGAAAAGTTACTTCGAGACAACCGAAATTTCGACATATCGAAGTTCGAGATAAAATGAGTAAAATCAGTTGAAAAGCACTAGGTTTTGTTCGGGACTTGAAAAAAAATTCGAGAAAGCCAAAATTTCGAGATAACCGAGTTTGACATAACGAGATTCACCTGTACTCTATAGGGATTAGAATCATTTGTACTTTGTAGCTACTCGATACAACATTATGTGATAAAGTTTGTCAGTGTGTTGCGACAGGTTGGTGGTTTTCTCTGTGCACTCTGGTTTCCTCCACCAATAAAACTGACCACCACGATATAACTGAAATATTGTTGAAAGTGGCATTAAACACCATAAAATCAAACCAAACCTACTTTGTAGTTCATCTATTTTTAGATCACCTGGACAAAGGTCAGGTGATCTTATTCTATCACTTGATGATTAGTATCTTAATACAAATGATGTATATGAAGTCCTCTACAAAGGTTCCTCATTTAATCTTATTTATTTAAAACACAAAAACATGTCAGTGATTGTAAACTCTCATCTCAGAAGTTACTATGTTAGAATCACAAATAGTACATGTATAATCAGGTGAGCCTCTAGTTGTCAACCCTGATGATATAGAGAAATAATTAATATTAGTGCTATTTTCTGTTATTTTTAACCCTGTCAACCCTGAATATGTACAGGCTCAGGTGAGCCTCTGGTTATAGAGAAATAATTACTATTAGTGCTATTTTCTTTTATTTTTATTAAACAATTATGATTGAACATTTTCATTGTGAAATAACAGTTTTGAAATGTTATTCTTTTTTTTAATTCTATAGTAAAATAACATTAAGTATTATTTTATGACTCGTCATGGTTACACTTTACTGTAAATTGTTTTAGATGTTGAAATAAAAATAAATCTTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12858	DDX23, PRP28; ATP-dependent RNA helicase DDX23/PRP28	EC:3.6.4.13	Spliceosome	ko03040	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_61421-1.9 global RNA-seq network