Detailed information of Bpl_scaf_61387-2.35 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_61387-2.35POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDBpl_scaf_61387268404301216-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08066PMC2NTPMC2NT (NUC016) domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR012588DomainExosome-associated factor Rrp6, N-terminalInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR045092FamilyExosome complex exonuclease Rrp6-likeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12124POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000467Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003727Molecular Functionsingle-stranded RNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0071035Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071036Biological Processnuclear polyadenylation-dependent snoRNA catabolic processInterproscan
GO:0071037Biological Processnuclear polyadenylation-dependent snRNA catabolic processInterproscan
GO:0071038Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071039Biological Processnuclear polyadenylation-dependent CUT catabolic processInterproscan
GO:0071040Biological Processnuclear polyadenylation-dependent antisense transcript catabolic processInterproscan
GO:0071044Biological Processhistone mRNA catabolic processInterproscan
GO:0071051Biological Processpoly(A)-dependent snoRNA 3'-end processingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12591RRP6, EXOSC10; exosome complex exonuclease RRP6EC:3.1.13.-
RNA degradation ko03018PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_61387-2.35 global RNA-seq network
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