Gene detail

Detailed information of Bpl_scaf_61340-4.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_61340-4.9	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1	Bpl_scaf_61340	368686	398413	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_61340-4.9

ATATTTTACAGATAACTTTATGGATAATTGGATTCCAAACACAAACGCCAAACCATTTATACCTAAACGATTGAGAACAAAAGCTACAAGTGAATTATCTAAAAGAAAATGCATTTCCAAAATACTTCAGGGAGGTATTGTAATTGTGTTGATTGTTACTTTAGTGATAAATATAACATTTATCTTGGAAACAAGCAAAAAAGTGAAAGATCCCCAGAAAATGGATGAGGTGAATGTTGGATTTAAAGAGAAAATTGAAAAGGCCATTGCTATAGAGATGACACAGTCCAAGGCATTATCAGTAGAAGTTCATTCTAGTAAAACTTCTGTTGGTGTAAATGTTGATGATACAGTGATTATACAGGATGAAGAAGTTGAGAAGAATAGAGGAATACATATTGCTGTGTTAAATCAAGCTACAGGCAGTGTTATGTCTAAGACCATATTTGATACATACAGTCAACATGAAGATGAAGCTCTATTATCTTATCTGAAGAAGATTTCTAATGGAAGAATTATTGTATTTGCCATAAAGGATGAAGGTTCATTTCAACTGAAATCAGATGCTAGACAGTATCTGAAGGACATGGGAAGTGAAAACATAGAAAACCTTGCTTTTAGAGATACATGGGCTTTTATCACAAAAAAAGGAGCAGGAAAAAAGATTGCAGAATCTCATGGGAAATCTCCAGCATTGGATAGCTGGGGAGAAAAAGTTACAATCCAAGCCTCAGTAGATCTTGTAAATATGAAAGACATTGAATGCCACTGGGGGAAGACAAAGTTAGACAAGAGAAGACAAACGTTCTGTAATAAAGTAGAAGGTTATGGAGATATTTGTAGTTGTAAAAACCCAGAACCAATCGTTTTCTCACCTCAAAAGTTAGAACTAAACAATATAAAGGATGTGCCTATAGTTATAATAGCCAGTGATCGACCACATTATTTGTTTAGAATGTTGAAAAACTTATTATCTATACCTGGAGCAGATCCTCGTTTGGTGACAGTATTCATAGATGGATATTTTGATGAACCTTTACAAGTGACCAAGCTGTTTGGATTACGTGGTATACAACATACACCATTAGGTGTTAGAAATGCCAGAGTATCTCAGCACTATAAAGCTAGCCTTACAGCAACATTTAATTTATATCCTGAATCAAAGTATGCTATTATTATAGAAGAAGATTTGGATGTTTCTCCCGACTTCTTAAATTATTTTAGTCAGACTGTACACCTGTTAGAAGATGATGATACAGTATATTGTATATCTGCATGGAATGATCAGGGTTATAACCATTCCTGTAAAGATGAGACACTGTTGTACAGAATAGAGACAATGCCTGGTCTAGGATGGTTGTTAAAGAGGAAGTTATATAAAGATGAATTAGAGCCACAGTGGCCAACACCTGAAAAGCAATGGGATTGGGACATGTGGATGAGAACTAACATGATACGTAAAGACAGAGAGTGTATCATACCAGATATATCAAGAACTTATCACTTTGGATCTAAAGGACTTAATATGAATCCATATTTTCAAGAAGTTTACTTTAAAAAACATTCCCTTTTAACAAAGACCAATGTGAAGTTAAAAAATATAGACAGTTTGACGAAAGATGCTTATGAAGAATTAATTATAGAATTAATCAAGTCAGCTGTTGTATTAGACCATACCTTAGATCCTTGTAAAGACAACTTTATACCTAAAAACCAGGTTGAATCTCATCTGATGTACATTTCTATGAATACAAGTACAGATTATGTCACATGGAAACAATTAGCAAAATGTTACCATCTGTGGGATTTAGATGTGAGAGGTTTTCATAAGAGTATGTGGAGAATGTTCATAAATGGTACGCCTATTATCATGGTGGGTGTCCCAGCTTCTCCTTATAGAGTTCACATGCCAGAAAATGTAAAACCTATATACATTCCTGCGCCAACCAAGAAATCATGATGATAGAGATATTTAGAAGATTGTATACATTTCTACAATTCCATAATCTAGGATTCATAGGTATTACAATATACAAGTTTTACCTTCATACGAGGTTAACATTGAAAGTTGTCAACCAAAGGGAAAACAACCTCGAGGTTCACCTCATATGAAGGCAGTAACTGTTTTATTATGCTGAAACTACTGTAAGATGTTTAAAAACTTGAATACTTTGTTTTGTAGAAGACAATTTCTGGTATAGTAAATATAATTGCGGAACTGGACTTCCGTTTGTCAGGGGTTGTAGACCGGGCAACAACCTATTGTCTTCCTCTTTATTATATATGTTTGGGTTGTCTCCCTTGTCAGCAAATTTTCCCTAAGACATCTAATTTGTCTTTTTATTTGTAAATTACTTTTATATAGTAAAAAATATGTAAGGTATAATAATATTATTAATGATGTGTTAATGACTGTATTGTCTTAATGTCAGAAGCAACAAATACTGTAAACTCATAAATTGATGCAGTGTAAATGTGACCAGACCAATATCACATCAGATACATTTAAACCCACATTTTTGCCTGTTTTCTTGGATTCACATTAATTTAATCTCACATTTTCACCTATTGTCTTGGATTAATATGTTTTTTAACCTCACACTTTAATGTGTTGTCCCAGATTCATCATAATTTAACCTCACATTTTCACCTCTTATCTTGGATTCACATAATAATTTAACCTCAAATTTTCACCTGTTATCTTGGATTCACATTAATTTAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03071	GNT-I	GNT-I family	Family	Interproscan
PF15711	ILEI	Interleukin-like EMT inducer	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004139	Family	Glycosyl transferase, family 13	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR039474	Domain	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, PANDER-like domain	Interproscan
IPR039477	Domain	ILEI/PANDER domain	Interproscan
IPR052463	Family	O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46396	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006486	Biological Process	protein glycosylation	Interproscan
GO:0008375	Molecular Function	acetylglucosaminyltransferase activity	Interproscan
GO:0016266	Biological Process	O-glycan processing	Interproscan
GO:0030173	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0047223	Molecular Function	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09666	POMGNT1; beta-1,2-N-acetylglucosaminyltransferase	EC:2.4.1.-	Mannose type O-glycan biosyntheis	ko00515	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_61340-4.9 global RNA-seq network