Gene detail

Detailed information of Bpl_scaf_61313-1.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_61313-1.11	E3 UBIQUITIN-PROTEIN LIGASE COP1	Bpl_scaf_61313	126702	149479	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_61313-1.11

CACCGACCTGCGCAGAATAATCAAAACATTCAGAACGATATCCGTTTGTTGTTCTCGGTGCACATTTTGCATACAAAGCAATTCAATCAACAATGCACATTTCATGACTGCAATAGTTGCGATCTCGTAATGGATGCAATGGAGAATATTTAAATCCAACATGTAAAATTTCATTTGCACATTATGTCAGGGAGAACTCAACAACAAGCTGACCGAACACGAAGAAAAAGAAATCCAAATCGAACCCTGCCACCCGTGTACACTGGAATAAGTGGGTCATTTGAGGACAAAGACAATGATTTTGTTTGTCCAATATGTTTTGATATTATAGAAGAAGCTCACATGACAAAATGTGGACATACATTCTGTCACAAGTGTATCAAACAAAGTTTAGAGAACAGTAACCGATGTCCTAAATGTAATTACCTGATAGAGAGCTCCGATCAGATATTCCCTAACTTCAGTTTAAATGAATTGATATTGAAACAAAGAGGAAAGTTAGAAGAGAAAAAGATTAAATTAGAACATAATGTAAATGGTGGAGGAACAGATTGGTATGACATAATTTCAGAAGACAATTTAGATCTACCAAATGTAAACAATTTACTGGAAATATTACAGAACAAGAAACAGAAACTAGAAGCTGACAACCAGCTGTCCCAGCACTTAATATTAAAGGACTTTTTACAACATGTTAGACAGAAAAAACAGGAGCAATTGGACCAGCTTCAAAAAGAATTATCATTGATCGATGAAGATTTATCAAAGGTGGAGGTGTTGATTTCTGAAACCAAGAGAAGATATACCTCATTTTCTGATCACCTTGTACCTAATGGATTTGACATGCCAACAGATAGTGGTAGTCAAGATGGTTTTAATGGTAGTAAAAATGCAGCAAAACCCTTTTTCAATGCAACAACTGCTACAAGACGGAAGAAAGTTCACCAACATTATGAAGACTTAGAACAATGCTATTTTTCAATAAGACAGAAAAGACTGTTTGAATTTGAAGATAAAAACGATGGTTTAGATGAATTTACTGAAAGTCTTTCAAAATTTACTAGATTTAGTTCGTTTAGACCATTAGCAACTCTGTGTTATGCAAGCGATATGTACAATGGATCCAGTAATATTGTGTCCAGTATAGAATTTGACAGAGACTGTGATTATTTTGCTATTGCTGGTGTAACTAGAAAAATAAAAATTTATGAATATGACACTGTGATAAAAGATGCTGTAGATATACATTACCCTGTTAATGAAATGGTGTGTAATTCTAAAATAAGTTGTGTGACGTGGAGTTCTTATCATAAAAATGTGCTGGCTAGTTCTGATTATGAAGGGACAATCACTCTCTGGGATGCATTTACGGGTCAAACTTCTAAAATATTTCAGGAACATGAAAAACGATGTTGGAGTGTAGATTTTAACAGAATGGATCCTAAATTATTAGCCTCAGGTTCTGATGATGCCAAAGTCAAGTTGTGGTCCACCAACACAGACCATTCTATAGCTTGTTTAGAAGCTAAAGCTAATGTATGCTGTGTATATTTTAATCCAGAAAGTCGTTACCATATTGCATTCGGTTCTGCAGATCACTGTGTTCATTATTATGATCTACGGAACACTAAACAGGCTGTGATGGTTTTTAAAGGACATAGGAAAGCTGTATCTTATTGTAAATTTGTAAATTCTCGGGAAATTGTTTCAGCATCCACAGATAGTCAATTAAAACTGTGGGATGTCAGTAAACCTACATGTCTGAGAACATTTAAAGGACATACGAACGAGAAAAATTTTGTAGGACTAGCTACAGATGGTGACTATGTAGCATGTGGAAGTGAGAATAATTCTTTATATGTGTACTATAAAGGGTTGTCAAAGCAGCTGCTGACCTTCAAGTTTGAAACAGTCAAAAGTGTACTGGAAAAGAACAAGAAAGAAGAAGAAGTAAATGAATTTGTTAGTGCTGTCTCCTGGAGACCTGGTTCTAATGTGATGGTAGCAGCAAATAGTCAAGGAACAGTCAAAGTAAGTGTAACCTTGACAACAAATTTTATTCCAAACAAATCAATGCCAGATCTTCTAATTCTATAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity RING\|U-box
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR042755	Family	E3 ubiquitin-protein ligase COP1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44080	E3 UBIQUITIN-PROTEIN LIGASE COP1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10143	RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2	EC:2.3.2.27	Ubiquitin mediated proteolysis	ko04120	PMID: 28812709
			p53 signaling pathway	ko04115	PMID: 28812709
			Circadian rhythm - plant	ko04712	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_61313-1.11 global RNA-seq network