Detailed information of Bpl_scaf_611-2.10 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_611-2.10NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1Bpl_scaf_611299425311082+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04410Gar1Gar1/Naf1 RNA binding regionDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR007504FamilyH/ACA ribonucleoprotein complex, subunit Gar1/Naf1Interproscan
IPR009000Homologous_superfamilyTranslation protein, beta-barrel domain superfamilyInterproscan
IPR038664Homologous_superfamilyH/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR23237NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000454Biological ProcesssnoRNA guided rRNA pseudouridine synthesisInterproscan
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0031429Cellular Componentbox H/ACA snoRNP complexInterproscan
GO:0034513Molecular Functionbox H/ACA snoRNA bindingInterproscan
GO:0042254Biological Processribosome biogenesisInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11128GAR1, NOLA1; H/ACA ribonucleoprotein complex subunit 1-Ribosome biogenesis in eukaryotes ko03008PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_611-2.10 global RNA-seq network
TOP