Gene detail

Detailed information of Bpl_scaf_6090-7.17 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_6090-7.17	WD40 REPEAT PF20	Bpl_scaf_6090	657256	678259	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_6090-7.17

CGCAAAAGTAGTACTTCCGGTCTGACGTCATAAATTACTATCCCTTTATGGAAACCTGTCTTCAAACGGAGTGAAATCTTTCTGTTTCTTTGTGTATTCCAAATTACACTGAAGTCATGTCTTCTGTTGAAACAAATATGGAGACATGTACTTCCTCTGACGAAAGGATAGACACCAAAAGGCCTGAAATGACAGTACTTTTAAAGACACAAACTTCAATACAGCCTGAGCTATCAGATGAATATTTAAAGGATAGAGACCCTTGTGTAAAACAATTTGAACATTGGTCAGAATATGAACAGGTTTCTTTTGTACAGCACCTGTTATCTCGAATGTGTCATTTTCAACATGGACAGATTAATGCATTTCTTAAACCTATGCTGCAAAGAGATTTTATATCTGCATTACCAGCTAAAGGTTTAGACCATATAGCAGAAAATATTTTATCCTACTTGGATGCCAAATCATTGTGTTCTGCAGAACTTGTTTGTAAAGAATGGCACCGTGTTATCTCAGAAGGAATGTTATGGAAGAAATTAATAGAAAGAATGGCTAGAACAGATACTCTGTGGAGAGGTCTGGCAGAGAGACGAGGATGGATACAGTTTCTGTTTAAGCCTAAGTCTGGTGAACAGTTGAAAGATCATAAATTTTACAGAAATCTTTATCCACAAATTATAGAAGATATTGATTTATGGGATCGTAACACGTTAGAATGCGTACAAGTATTGACAGGCCATACTGGGTCTGTTCTATGCCTACAGTATGATGATAACATTATCATATCAGGTTCTAGTGATTCTACTGTTAGATTTGCTTTCAAACAGCTTAAATTTTTTGACAGATCTATAGCAGTATGGGACATGCAATCTCCGACCGAAATAAATTTGAGAAGGGTGCTGGTGGGACATAGGGCAGCTGTTAATGTTGTTGATTTTGATGAGAAATATATTGTATCAGCATCCGGTGATAGAACTATCAAGGTTTGGAGCACATCTTCTTGTGAGTTTGTTAGAACATTAAATGGTCACAAAAGAGGTATTGCTTGTTTGCAGTACAGAGATAGACTGGTTGTCAGTGGCAGTTCAGATAATACAATCAGAAAAATCAAAGTGTGGGATCTTGCAGCAGCTTTGGACCCTCGAGCACCAGCAGGAACCCTCTGTCTCAGAACACTTGTGGAACATTCAGGGAGAGTTTTCCGACTACAGTTTGATGAATTCCAAATTGTAAGCAGTTCACACGACGACACAATTTTAATTTGGGACTTTTTAAACGTAGAACCACCTGAAGGCAGTTCACGGTCGCCAGTACGGACCTATACCTATGTGTCAAAGTAACCTGTGATTATTGTGTGTGACAGATCTGAAAGCTCAATGTGTACATAACAAAATGTGGACCAAAAGCTTCTGCTGTTCATTGATTTCGGGAGACTGTGTATGGAATAAAATGGAATGTGTGATGGCTGATAAAAGTTTTATGATGACAGCTTGGTGTCATTTTGCTTATATCTGCCAATTGCATGGGATGAAAATCATATTGACTATTGTATTGTCTCAAAAAGACCTTTTTTATAATTGAATTTGGAACATAAACGGTTGTATCTTATTGTGGGAAACCATCCTTAAAGGATAAAATCATCTAGTTTTAAATTGAAGTATTAAATTGCATCCAGTGATGTTATTTTATAGAACAAAATTCATGATTTTTCAACACAACCAAAGTACACATTGTTTTGTTCACAGGGTTCATATTTCAGACACCTATCAAATTCCATTATTTGTATAACAGGTTTCAAATTTGTGGTCTGAGCCATTTTATTAGTAATGTTCGTTAAGATAAGGTAATAAATGCTATATAGATCTGTATTTGATGTATTGGAATGTCTGTGTGACTCACTGTTAAGAATAATAGGTGTTGTGTCAGAGGTCAAGGTTATGTTCTATTATTAAGTTTAAGTCATATGATCATGGTGAAATCATATATTCATTGTATGAAAGTCATAAATCGCTATTTTTCTTAAAATTTGAAAATCTGTAATCAACATTACAATATGAAATATCGAAACTAGTAATTGGGGGATTTTGGAATCTGCTGCTGTGGTCATGTGATAATTAGATTTACATCTACCTATGTAATCAATTCCTATCAATACTTATAGTTTGTGCCTGAGTTTGACTCCTACTTGATACAACCTTGTATGGTGGATTTTGTCTGTGAGTTTCAGGATGTCAGTTGTTTTCTGTGGGTATTCAACTTTCCTCCACCAATAAATGAATAACTGACCACATGAAATAACTGGATTATAAATTAAGATGTGAAAGAAATACCTATCTCTTGCAGTAAAATGTCATTTGAATTTCATCTGTTGAAATAAAAACCTGTATGTTTTATTCAAGCAATTTATGGTCTTGATTATTTCAATGTTCGTTTGAGTTTCTGTTTGATTTGCCAGGCAGAATTGTTCAGTTTTCACTTACAATGAAATAATCTTAAGATCTATGATTGACAGATGTTGTCTACCATATTCAGCAGATGATGTACTTTTTAAGTGACCTTGCTCAAAAGTAACAAGTTTTCAATGTTGTAAATCTGTAAAATACTTAAATTGTGGTTCCTGCAGACATGTGAGGTTTTCAATAAGCAATTTCCAAATATCAGTGAAAATATATATCTTTTTTGGAACCTCCAAAGTAAGTATCCTCTTGTTTTGAAAGTGGTGTTAAACACCAAAAATTGTCATTTTTATCAAAAAATTATATTTAGATCTTCTTTGAAGCATCAATCCTATTATTTGTGAATAAAACAAATCAAGTCGATACAATTATAATTCTTTTATTTTTGTCTACAGACAATATTAACAAAGATGCAAATTCTAGCTCTTTTCACAGTAAAACTGTATTCTTTATTTATTTGTCTAAATTCATGTTTGCTTGTTATGGATAATTGATGTTTAATGTCCCTTCCCCATTTATTGATCAATATGAAATCAATCATATTTAGTATT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12125	Beta-TrCP_D	D domain of beta-TrCP	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR021977	Domain	D domain of beta-TrCP	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050995	Family	WD repeat and F-box domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14604	WD40 REPEAT PF20	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03362	FBXW1_11, BTRC, beta-TRCP; F-box and WD-40 domain protein 1/11	-	Ubiquitin mediated proteolysis	ko04120	PMID: 28812709
			Wnt signaling pathway	ko04310	PMID: 28812709
			Hedgehog signaling pathway	ko04340	PMID: 28812709
			Hedgehog signaling pathway - fly	ko04341	PMID: 28812709
			Hippo signaling pathway	ko04390	PMID: 28812709
			Oocyte meiosis	ko04114	PMID: 28812709
			Cellular senescence	ko04218	PMID: 28812709
			Toll and Imd signaling pathway	ko04624	PMID: 28812709
			Circadian rhythm	ko04710	PMID: 28812709
			Shigellosis	ko05131	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_6090-7.17 global RNA-seq network