| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_6090-6.29 | LSM1 | Bpl_scaf_6090 | 640417 | 643159 | + |
| CDS | |||||
| Bpl_scaf_6090-6.29 | |||||
| Transcript |
| Bpl_scaf_6090-6.29 |
| Protein |
| Bpl_scaf_6090-6.29 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01423 | LSM | LSM domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001163 | Domain | Sm domain, eukaryotic/archaea-type | Interproscan |
| IPR010920 | Homologous_superfamily | LSM domain superfamily | Interproscan |
| IPR034104 | Domain | Sm-like protein Lsm1 | Interproscan |
| IPR044642 | Family | U6 snRNA-associated Sm-like protein Lsm1/8 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15588 | LSM1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000290 | Biological Process | deadenylation-dependent decapping of nuclear-transcribed mRNA | Interproscan |
| GO:0000339 | Molecular Function | RNA cap binding | Interproscan |
| GO:0000932 | Cellular Component | P-body | Interproscan |
| GO:0000956 | Biological Process | nuclear-transcribed mRNA catabolic process | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0016070 | Biological Process | RNA metabolic process | Interproscan |
| GO:1990726 | Cellular Component | Lsm1-7-Pat1 complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12620 | LSM1; U6 snRNA-associated Sm-like protein LSm1 | - | RNA degradation | ko03018 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_6090-6.29 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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