Gene detail

Detailed information of Bpl_scaf_60638-0.38 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_60638-0.38	NEPHRIN	Bpl_scaf_60638	44434	64012	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_60638-0.38

ATGCTAGCATTATACGTCGAGTTGAAACCACCAACGAATATAAGCATCACTACATCTGGGAATAATGTCACAGTTAGATGGACTTTACCTGGAGAATCTGAAACATTTACATACCTTGAATTTCATTCACCTGGACGTAGGGAGAAGGATGAATACATTAAGCAACCTCAGTCATCATATACAATTACCCTGACGTCTTGTAAGAAGTACAGATTGGACATGCAGTGTACTTATCCCAATGGTAGAAGGTCGAAAAAAATGGAGAAGACATTTTGGGTTACTAATAACATCTTCTATTCAAATATCAACACAGACAGCAACATCTCATGGACAACAAGCCTTGATCAGTTTTATTTTGTTCGATCTCCATCATATACAACAATATACATTGTTCGTGGAGACATATTACCAAATGCTGGCGTGCATAAATACAAGATTAACTCTAAAGGCACAGCACAAATAGACATATCTGTATTAACTGTTAACCAGAATGATGCTGGTATTTATCAATCAATTAGTTCGGCAGGTCGTCCCAATGGATGTTGTGTACTAATCATAACAGACAAACCAAAGACGCCTACCATTGCATTTAGCAACCTTCCATTCGTTGGTGATGAGATTGAGTTTACATGTACGTCTCAGGTGCAGCGTTGGCCGGTGGGACTTTCTTCAAGTCTTACTTACACCTTTTTCGTCGATGGAGCACAGCAACATAATACCCTTAAAATCAACGTAACTAATTCTGATAAGGGAAAACAGGTTTACTGCAATGCCATGGATGATCGCCGAGATGTGTCAAATGTCAGCAATGTTATAGTTTTAGATCCCTATCATGGCCCTGACGAACCTGTTTTATCACCCTCGGCGACAAGTGTCTATATAACAGAAGGAAACAAGCTTGGACCAATTGTCTGTTCTGTTGAATGTCATCCGAACTGTAACTTTGTATGGACACACAGAAGGACAGATGGCTCTTTTTCTGATATAAGTTCATCGCAATCATTAGAGATTTACAATATTACAAGAGAACAAAGTGGGAAATATCGTTGTCGTGTTAATCATCCTAATGACACATCAAGATTTCACAGAGCAGAGGTTATGGTAACCGTTCATTATCCACCTTCAATCATGAGTTTGCACCTCGGTAAAGACTCGTCTGGATTCACTACTTATAGGACAAGTTATAAGTTGGAAGAATATCAACAAGTTAATCTTCAAATGTATATTGATAGCAATCCAAAATCACGCTTAACCTTTGATTCTTATGATTTCCCCAAAACACCGTTGATGCACAACACAAGTGGCAAATATTATACAGCAACACTTCCGGTCTTAGAATGTGAGAATTCTGGGAACTTCACGGTAGAAGTAGACAATGGTATTAAGGACGTTGTAAAACAGACTATTAACCTTGCAGTACAATGTAAGCCGAAAAAAATAATGGTAGCCAGACAGATAATAGGAGCACAGATGAATTCTACTACAAATATTACTGTGCAACTTGTGTCATATCCTAAGCCCACGGCAGAGTGGCGTACATATACAGGACGTGACTGGACTGTACAACAAGATGGCGTCCAGTACAAATACATCTTGACTTCTTCTATAGAAGTGAAAAACGAGTCAGACTTCAAACTCTATAAGTTTACAATTGTGAACCAGTTGGGATCTGTTGACTTAAATATAACACTGATACCCAAAGTTCATCCACAAACTCCCGCAAATTTCAGCTTAGTTAGTTCTACTAAAACAAGTATATTGGTAGAGTGGACTCCAGGTTATAGTGGTGACCACGAACAGACTTTCTATCTAGAGTATCGAGCACGTAGAACAGAAACATGGTCCATAAAGGAGATATCACACAATACAAAACAGTTGAGCAGTCTGACCTATGTTCTTTCTGGGTTACAGGATAGTACATTATATGAATTGAAAATGTATTCGGTAAATATGTTTGGCAGGAGCTTAAGTACAGCTATAGACATCATACAAACAAGAGTAAAACAGGACAAAGGTTGGTCAGGTGGAACAGGCTATGAAAATTCGAACAGGTAA

Transcript

Bpl_scaf_60638-0.38

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003006	Conserved_site	Immunoglobulin/major histocompatibility complex, conserved site	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051275	Family	Cellular adhesion and signaling domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11640	NEPHRIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0005911	Cellular Component	cell-cell junction	Interproscan
GO:0050839	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_60638-0.38 global RNA-seq network