Gene detail

Detailed information of Bpl_scaf_60512-0.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_60512-0.13	COPPER AMINE OXIDASE	Bpl_scaf_60512	44472	47765	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_60512-0.13

ATGAGTTTACTTACAATTGTTGTGAAAGATATTCGCTCTTCGTCAGTAACACTTGACAGTAGCCATGCAGCATTAGATGTCGAAATTGATGAGAAGGATAACGTTTTCTCCCAGTTAAGCTTCGAAGAAATTGATCTTGTGTTAAACTTTTTGTATTCTTTAGAGAAAATGAAATTAACTACGCCAAATCGTACCAAAATCGACACAAGCTTCATTCATACAATAGAACTGCATTCTCCACCAAAGAAACAAGTACTGGATTATTTGAGAAATAATGGGAGTAAACCGTCGCGTAAGGCCAAGGCTTTAATATTCCGAGGGGATATAAACCCACCGATGATCGAAGAATATATTGTTGGTGATTTGCCAAACCTAACATATGCTAGAATTGCTAACGTGTCGTCAAGGCACACTAGGATCCCATACATATATCGACCCTTCTCCACATATGAATTCATGGGAATATACAAGCATGTTATAGCTGAGATTGGACATAAAGCCAGGCATGTTCTATTGGAGAGTTACAATGCCACGACAACAAATTGTGGGGATCAGTGTCTTAGATTTTCAATGACTCCAATATCAAGTGGATACCTCCAAGGGGATAAGCGTAAAGCCTGGTTTTGGTTTGCTTATGATGTAGAATTTTTCACTTTACATCCAGTCGATTTCCAGTTTTTGGTTGATATGACCAGCAGTATGCCGTCGAATTGGACAATCGAGCAAATTTGGTACGCAAACAAATTATTTCCGTCTTTGGACAATTTCCTACAAGAATACAAATGCGGGAATATTAACAAAACAAAATTAAAATTTCCCGAACAAACGCCTGACCTATACAGCAGTGTTGAAACGAGAGACCCACCAATGACGTCTTCAAAGAGGAGAGCTCCTATCCAATTTGAACCAGATGGTCGTCGCTTTACTGCATCTGGAAATACAGTACAATATATGGGATGGAAAATTCGACACCGTATGTCGCCGACGAATGGATTTCAAATGTTTGACATAACCTTTGATGAAAATATTATTGCTTATGAAGTGGGTTTACAAGAAGTAATAGTCATATACTCTGGTTATACACCTTCAGCAAGAATGTTACATTATGCTGATGGTGCAGGGCTGTTTGGTACACGTCATCGTGGTTTGGTTCCAGGAACCGATTGCCCTGAAAATTCTCAATTTATAGATGTTCATCTTTATTCATCAAATGAAGGTGGTAAACGAACGTATGAAAATTCAGTTTGCATTTTTGAACACAACAGAAACACTCCACTTCGACGCCATCGTGCATATGGTAGATCTGGGGCATTTTATGCTGGGCTTGTAGACTCTGTTCTTGTAATCAGAACAATTATGTCTGTAATAAATTATGACTATGTCGTTGATTATATTTTTCATCAAAACGGTGTAATTGAAGCGAAGGTTTCGTTAACTGGCTATCTAAGTACTTCATTTTATTTCTCAGAAGAAGACCCCTACGGAACACATATTCAACCACATATCCAAGCTGGACTACATAATCATCTTTTTCATTTCAAAGTTGATTTAGACATAAAGGGAACAGGAAACAGATTTGAGACCATTGATATAAAACCTGAATATAAAAAAGACCCATGGTTCAATGAAAATCATCACCAATCATTTTATGAGAGAAACGTGAGGTCTAAGGAAAAGGATGCCATGTATACTTATAATTTTCAAACGCCAAAGTACCTCTTGATTTCTAACTATAATAAAACAACAGCGGAAGGCTTACCGAGATCATACAGAATCAAATTAAATGGTATGTCGAAAATGTTACTACCAGATGAATACGGGTTCGCTAACTCTATATCATGGGCTAGACACCAATTAAATTTTAAATTCTTGTTTCAGGATCTGGTGACCTGGATTACGTTAGGCACTCAACATTTACCACACAAAGAAAACATGCCAAATACGGCTGCGGCCGGCTCCCAATTATCGTTCTTTTTAATTCCATATAATTATTTTGACGAGGACCCATCTATGAGGTCTGTTGATTCTGTACGCATCATTCCAAAAGATCGAACGCGACCAACAGAGGGAGCCATAGTCAAAAGAGGAAGTTATACTGGTAAACATAATTGCATATCGATACAGAATAAAATTGATTCCAGATTAGCTGTCAACAGCACTTTCTTATATACGTAA

Transcript

Bpl_scaf_60512-0.13

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01179	Cu_amine_oxid	Copper amine oxidase, enzyme domain	Domain	Interproscan
PF02727	Cu_amine_oxidN2	Copper amine oxidase, N2 domain	Domain	Interproscan
PF02728	Cu_amine_oxidN3	Copper amine oxidase, N3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000269	Family	Copper amine oxidase	Interproscan
IPR015798	Domain	Copper amine oxidase, catalytic domain	Interproscan
IPR015800	Domain	Copper amine oxidase, N2-terminal	Interproscan
IPR015802	Domain	Copper amine oxidase, N3-terminal	Interproscan
IPR016182	Homologous_superfamily	Copper amine oxidase, N-terminal	Interproscan
IPR036460	Homologous_superfamily	Copper amine oxidase, catalytic domain superfamily	Interproscan
IPR049948	Conserved_site	Copper amine oxidase, TPQ-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10638	COPPER AMINE OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005507	Molecular Function	copper ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008131	Molecular Function	primary methylamine oxidase activity	Interproscan
GO:0009308	Biological Process	amine metabolic process	Interproscan
GO:0048038	Molecular Function	quinone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11182	AOC1, ABP1; diamine oxidase	EC:1.4.3.22	Arginine and proline metabolism	ko00330	PMID: 28812709
			Histidine metabolism	ko00340	PMID: 28812709
			Tryptophan metabolism	ko00380	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_60512-0.13 global RNA-seq network