Gene detail

Detailed information of Bpl_scaf_60425-4.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_60425-4.9	HMG-BOX TRANSCRIPTION FACTOR BBX	Bpl_scaf_60425	405335	454960	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_60425-4.9

ATGGAAAACATTCATCAAGATCACAGGATTTATACTATGAGCAGAAGAGAGACGAGAATTAAACGTGGACGATCAGGCAGCCCTCCCCCCTCAGGACTGAGGTCTGCTGGCACAGGAAAGAAAAGATCAATACAGAATCAGGAGGAATCTGGTGAAAAAACAGATGTAAATGAAGGTGTGAAAGATCCCAAAACACACGAACCTAATGTTCTTAGTGGGGCCACAAAAGGACGAACAGGGAAAATCAGGAAAGTGCTAGAGGAAGAGACTGACAAGAATAAAGAAAGTGGAGCATCATTTCAGCAACCTCTACCACCTCCCTCTCTCCCACCACCTCCGAGTGCAAAACCAGAAGTTACTCCCACCATGCAGCGATTAGTGTCAGACGTAATGAGTTACCCTGGTGATGCTGGTATGAGTACTCCTGGTGGAGAAAAATGTATCGCTATTCCACCAAAGAAACGAAAAAGTAATGACATGGAAAGGGAGGTAATGCCCCCTTCTAAAAGACCTTTAATTGATTTGAGTGAGTGGATAAATCAACGTGTGCTAGCGAAACGTGACTGTGCATATCAGCCAGCAGTGATTAGGGACATTAAAAATAATCGTCATATTGGTGTTCAGTTTGACAGTGATAAAAACTTATTGTATTATAACGATGTCGCTGATCAGAGGAACTTCTATGATATTATTAGCGATCATAGTCCAATGGCTATCATGTTAGGGATTGGGTCTAAAGTTTGTGTCCGGACCAATCCAGAAGAAAATGTGTATTTTGAAGGACAAATGGTTGCCAAACGTGTTCATCAAATAGGATACAGAGTTAGAACAAAAGACAATAAATTTGATGATTGGGTTTCAAGGGCAGTTTTGAGGCTGCTTCAACCTCCATGGTTTGAGGATCTTGAAGAAGGGGTGCCTGAACAAGAAACACCTCCACCACAACAATTTATTTCCAATCCAATTTCTGTACAAGTTCCATTGCAACCTCAGTCTTTACCTTCTCACATAACTCATCATACAGAAATCAGTCCATCGATCGTTCAGCGATTTGAAAGATCACCGTCGTTGCCACAGAGCACAAGTAATGAAAGAGGTGATTCATCAGAAGATGAGATGAAAAGTGAAGACTTCTTTGATTCTTCAGGCTTAAGTACACCAAGGTCAGGAAGTGCAACTCCTGGCTCAGGGTCGAGGTCGCAAGGTAACAGGCAGCCACCGAAAAAACGAGAATCTGCTAGGAGTCGTAGTGCTCAGTCCGGGGAAAGCAGTCGATCAAGTACACCAAGATCACCATCAACATCACAGAAATATAAAAAAGGAGATGTTGTGTCTACTCCAAATGGCATCAGAAAAAAATTTAATGGGAAACAATGGAGAAGGCTGTGTTCAAAGGAAGGTTGTACAAAGGAGTCTCAGAGGAGAGGTTATTGTTCTAGACATTTGTCAATGAAAGGTCAGAAGAATGGTAGAGGTCAAGGTTACCCAGGATCTGGTAAAGGTGATATGAATGATGGACAAATAGATTGGGAAAACCAATCAACACGTGATAGTGAATATGACCAGTCTATTACTCCTGTACGTTCTGATGAAACAGAGGCAGCAAATATGTTGTTATCTCTGGGAAATTCACGATCTACAACACCTGCATATTCTCCAACACCAATGCAAAATCCTTTGTCCCCAATAACAGGAAATATACAGTCTCCTTCAACAGGAGGCAGGAATTCAGTATCATTCACACCTATTTCACCACTTCCAAGATCTCATGCACAGGTGTACATGAATTCTCCAACCCGAAGTTGGAGCTCAAAGTCTGGAAGTTCGTCTTCTGAACATGTATCACCAATAACACCAAGGTTTCCAGCAGGTTCTAATGCTTTAGGGATGATGCAACCACATTCACTAGAACATTTATATCAAAAGAATGCTAATATGCCAAAGCAGGACTCGATAAGAAGTGAAGATTCTGGTATTGACATTCACACGCCTACAGGACCAAACTCTCAGAGAAATATACCATTTAGTGCTTTTCCAAGTCCTTTACAACAAAGACTTGGCAGTTTGCCAACTATGCACATGCAGTCTGAACTACATAATCGTATCAAAGCTACACAAAGTCTTTCTTTAAGTTCTATGCCTTCACCGAAATCTGTGCAAGAACGTCAAGCTGAAAAGACATATCATCAATTACGCAATGTTCCGTTTGCAATGAATAATAATGCCATGCCTATGACTGTTGAAAGGTCAAGAGAATTACCTGTGACCTCAAACAATCATGCAATGGGAAGTGTTGCTATGACAACAATGGCCACTTTAAAAAGTTTAATTAGTGCTAGTCCAATAAGAACACAACCATCTGTTAGTCCAGACCCCAAAACTGTTTATGTAAATAACCATAGCAACCACAGCCAAGTAGGAAAGTCACAGAAAGTGTCCATTATTCAACAACAGCTTCAACAAGGGAATCCAATGGCCTCTGGTTTGATGATTTCTGCATCTGTTCAATCTTTGTTACCTGTGATGCCTTTAGGAGATGGACCACGAAAGATCCAGCAATTAACAGAAATATCCACCGGTGAAGCCCCAAACAAACCAGTTCCTGTGTTTCCATGGCATTCCCTGGTACCCTTCCTGACTAACACTGGACCTTCCAGTGCTAAACCAGCTCCACCAACAGAACCAGTCCACCAGCCAGCTGAGGCTCAATTAAAGAGATTATCACCAGCACCTCAACCATTAACCAATCAGAATGAACCAGATACAGGTCCTGTGTTAGATGAAGATGATAATGATGATTATGATGATGATGTGTTTGATGATACAAGCAGTAAACCCTCCCATCAACAAGATACTCCTCCCACAGATAACCAGGACAAACCAAAGAAGGAAACAAATAAACGACACAGACATCTGGTTCATCAGCGACACCCAAATCAGGACAACAGAACAGTTAGTAAGATCCTCGGTGAATGGTGGTATGCCCTAGGACCAAAAGAAAAACAAAAATACCATGATTTAGCTTATCAGGTTAAAGAAGCTCATTTTAAAGCTCATCCAGATTGGAAATGGTGCTCTAGAGAAAGGAAGAAATCCAGTACAATAGCTGAGAAACTGAAACAACGAAGCAAAGAGGTACATGAAGGTCTACCTGAGGTAGACATACCAGATGATGAGGACCTCAACAAAGAGTTGTCACTGTTTGAACTTAAACGGGGGAGATCTCAAAGTTTATCTGCAGTACCACAGGATGGAGAAACTAGATCAGCGTTCTTTCCTCCAAATAAACTTCAAACAGGGGAGGATCGTCATAAATTTGCAGAGGCATTGAAACGACAGCTGTCTCAGACATTTGGTGATCAAGATATGACTCCAGAAGATCACAATCAGTCATCACCTCAACATTTACCTAGACCACGCCCACGCTACCAGTCTGTTACTAGGCAACTAGATACTGATGAAACAATGAGTGATGATGAACGTATGGTTATTGACGAGTCTAACAAGGATGAAGGCAATGAGAGTGACAATGAGGCCAGTGATCTGATCTGTAAGGAGCATGTCTCCGACAGCGAAACAGACAGTCAGACGGAGGAAGATAATCTCATTGAAAATAAAGCATTTCCTCAACAACGATTTTCTCCTGTAAAACATATCAATCCAGCAGATATCACATACCGTCCAACACCAATTCGAAAAGTACCAGAATCTCCTGTCAAAACTCAAACACGTATGGTGGGAAATAATGAAAATGAACGGTTGATTCCACGTCCCTCGAGTGTAGGATCTAGTTTCCAGCCAACAGGAGCAGTGTTTCGTGCTAAAGGTGGACCTAACAGGAATATGTCAATTGGTAGCATGCAAGAATTGAAACAGATAAATAACTCCCAACACAGAATACAAATTACCCAACATCCAACAGTCAAAATGGGACAAATGAAGATTCACAATATAACTATGACGACAAAGGAAAATGAACAGATTTTAATGTCGTCCAACACAGAAACGATACTTGGAAATCAGAATGGTTCTGGTGGTGTAATGAGGAAAGTTACTCAGAAAATGAGGGGGAAACCAGTTCAACACAATGTTTCAATGAGTGGTTCAAATAGCAATTCAATTGGAATTCCTGTTACGTCAAGTAACATACAAATAGTCAACTCTAATCAGACTTTTATTACTAATGCTAATTATTCAATGAACACTGTTGCCTCAACATTTACTACTGTAGGTAAACCTATTACTACCCCTGTTCCTATTGCTTCAAAACCAGCTGTCACAATGCAGCAGGGGACCATGTTAAAACCAGCAAATATGCCGGGGATTAATCTTCAACAACAAGCCATACTTCAGGGCTCTCAAAATAACGGAACGATTGTATTACAACCTTCAAATCAACAGTATGGAATGACGATTCTTAATCCTACAGCGCATTCACCAAAAACATCGGCCATTCAAACTAGTATCGGGGGAGGTTACATAACAACATTACGGAACATTGCTCCCCCTCAGAACCAGAACCAACATATACAACAACAGCCACACACATCGACTCAAAGTATGGCACCACAAACCCTCCTTACAAATTTGGTGCTAAAATCTTCTCAACAAGTCTCAGCACCATTGACTGTACAAACATCTCAATACCAACAGCAGCTAGGTCAGACATTAAACCAGGGTAATTTACAGCCTGCACAACTACAATATATTCTACCATCAGTGAGGGTAGCACCTTCTAGTGGAGGTAAAGTTCAGAATATTTTACAGATGGCATTGCCAGGGACACCAGTTCAGCAGGGTAACATACAACTAACCTTTACAGGGAACCAGTCACCATTGCCTCAACATTCACCTTCCCCTCAAGCTGCTCAGATGGGAAAATTTCAAATCTCATCTGCAGCGGCAGGACTGAGATTGACAGCTCTTGGCTCGCAAGGAAAAGTCTACCAAACACAACAAGCTAATCTTCTGTCTCCTAATCCACATAGTTTGAATTCTCCTATAGTGCTGAATACCATGGGAAACAAACAACAAACAGTCTTAACACAGTTTCCCACTTTAAATCAAAGTGTGCTTGCTACACCCTTGACAACTGTTGCCATGGCTCAGCCAGTTGTCTCCCTTGCAGCTTTACAACAACAACAACAACAACAGACATTGCACACACAGCAGGCTATACCAACACATATACAGATACAGCCAGGAACACAACAACAGATATTTCAACAGCCTTCAACTCAACAAAAAATATTGCTGACCTCAACTCCAAAGTCACATGACACTGTACATACAGTAAACAATGTAACCATGGTAGCAGGATCACCGTCACCTGTATCAAAGACTCACATTAATTCCCCTGCCTATGCCTACGTTGGCTCTATACAGCAAGGATCACAAGGGGCTGTTCAGCAAGTGTTAATACAACCCCAGACTACCAGATCTCCAGCACCCAGTCCTGGGGTCAGTCAACACAATATAGCCCCAAAACCTGTCAATCAGCAGACAGTTCAAAGTCCACCACAGAGCCAGTATCAAGGAGTATATAAGACACCTAATGTGAACTCTCTGACAACTGAAGCCAAAGGAGTATATAAGACACCTAATGTGAACTCTCTGACAACTGAAGCCAAAGGAGTATATAAGACACCTAACGTGAACTCTCTGACTACTGAAGCCAAAGGTGATATAGGCTATATATCTGGTGGAAATCAGAAGTCTCATAAGGTCAAGGCCACAATAGCTACTATACCTGTTGCCACGGAGAGTTTACAGGTGACCACTACAGTTCCAGCAGTATCAAGAATGAATTCACAAGCACAAAGTCCAAGACTTTCTCCTATACAACACTACAACAGGAGTGTTCCCCAACAGTATGGCATGAATCATAAACCTCCTAGACCTTCACCTCTGGTACTGACCTCTGAACCTTCTAGACCTGAGTCAGAGTTTAAAGATCAAAGTTATGACAAAAAAGAGGATCATGTTCAAAATCATGATGTGAAGCCACAGAGGGCATGTAAAGGGAAGAAATATAGGGAAATGGTTGCAGAGGGAGGCATCCGTAAAGAGAGAAAATCTTCTAAAGGAAGTACCGATTCAGGGGAAGAGAAATCTCCTACACAAGTCAAACCACAACGAGACACAAACACTACAGAACAAACAGACTTCCCCTCACCACAGTCAGAGAATGAACAGAGTGTGGAAACAGTAACTAAATCTGTCACATTTAGTACTCTACCCAGCATCAGTATGCCAGCTCCATTGTCTACAACCATGCCAACATCAGCAGATAACAAACCCTTGGAGAGCCCCAGGAAGCCGAAGATCAAGCCTCCTCCATTGCCAGCCCATGTTTTACAGTCTGCCTCATCAATAGTTTCACCTAGCAGCACCAATAGTCCACGGCGGGTAACGTTCAAAAAGTCAGTGCAAGATGGGATGGAAAAAGTGCTAGAAAGAGTTGATTTTGACAGAAGGTTTGAACAACTCCCACAGTTTGTACCAGAGAGCGCTGATATGTCATCACCTTTACCACAGAGTCCTAGGGCTATAATTAGTAACTACAAGAAAAGGGGCAGAAAAGTTTCTTCTCTTGCTACTGGCGAGTTGACGCCAAAAGATATAGAAATGTATGAAGGACATTCGCCAAGTTATAAGAAAGTTTCCAGTGAATCAGAAGGAACACCAATGGGTACACCTATGGGTACACCTATGGGAACACCGTTGGGCACACCTATGGGAACACCGTTGGGTACTCCTTTAGGAACACCACGAACTCCAATGACAGGAACACCAAGAAGTGCTATATTTGGAGATGACAACATGTTTTTTGGCAAAAATTTCAGTCTGGAAACCTTGGCTGATGCAGCTGTATTATCTAAACCAGATGAGTATGGTGATGGCTTGAGTTCACCGAGGACTCCTGAGTATGGTGATGGCTTGAGTTCACCAAGGACTCCTGCATTTATTTCTTTATTATTGATTTCAGATGAGTATGGTGATGGCTTGAGTTCACCGAGGACTCCTGCATTTATTTCTTTATTATTGATTTCAGATGAGTATGATGAGTATGGTGATGGCTTGAGTTCACCAAGGACTCCTAAAACTCCCAGTTCTCCTGGACAGTTTTCATCATTACCACAAGCCACAGCGACGTTTCAAGCAGAGCATGTTAGTATATTCCCTTCAAAAGTATGCTTACAGCTAAAGATTAGGGAAGTTCGGCAAAAAATGATGGCTCAATCGGCAGCCGTGGAGAGAGCTGCTACAGGAGAAGATTCTGCTGGTACCAATGACTCGCAGGGAAGCAGTGGCAGCAATCAAGGGGGAGATAACTCTGGGCAGGCCCAGTCAGAATGA

Transcript

Bpl_scaf_60425-4.9

Protein

Bpl_scaf_60425-4.9

MENIHQDHRIYTMSRRETRIKRGRSGSPPPSGLRSAGTGKKRSIQNQEESGEKTDVNEGVKDPKTHEPNVLSGATKGRTGKIRKVLEEETDKNKESGASFQQPLPPPSLPPPPSAKPEVTPTMQRLVSDVMSYPGDAGMSTPGGEKCIAIPPKKRKSNDMEREVMPPSKRPLIDLSEWINQRVLAKRDCAYQPAVIRDIKNNRHIGVQFDSDKNLLYYNDVADQRNFYDIISDHSPMAIMLGIGSKVCVRTNPEENVYFEGQMVAKRVHQIGYRVRTKDNKFDDWVSRAVLRLLQPPWFEDLEEGVPEQETPPPQQFISNPISVQVPLQPQSLPSHITHHTEISPSIVQRFERSPSLPQSTSNERGDSSEDEMKSEDFFDSSGLSTPRSGSATPGSGSRSQGNRQPPKKRESARSRSAQSGESSRSSTPRSPSTSQKYKKGDVVSTPNGIRKKFNGKQWRRLCSKEGCTKESQRRGYCSRHLSMKGQKNGRGQGYPGSGKGDMNDGQIDWENQSTRDSEYDQSITPVRSDETEAANMLLSLGNSRSTTPAYSPTPMQNPLSPITGNIQSPSTGGRNSVSFTPISPLPRSHAQVYMNSPTRSWSSKSGSSSSEHVSPITPRFPAGSNALGMMQPHSLEHLYQKNANMPKQDSIRSEDSGIDIHTPTGPNSQRNIPFSAFPSPLQQRLGSLPTMHMQSELHNRIKATQSLSLSSMPSPKSVQERQAEKTYHQLRNVPFAMNNNAMPMTVERSRELPVTSNNHAMGSVAMTTMATLKSLISASPIRTQPSVSPDPKTVYVNNHSNHSQVGKSQKVSIIQQQLQQGNPMASGLMISASVQSLLPVMPLGDGPRKIQQLTEISTGEAPNKPVPVFPWHSLVPFLTNTGPSSAKPAPPTEPVHQPAEAQLKRLSPAPQPLTNQNEPDTGPVLDEDDNDDYDDDVFDDTSSKPSHQQDTPPTDNQDKPKKETNKRHRHLVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAYQVKEAHFKAHPDWKWCSRERKKSSTIAEKLKQRSKEVHEGLPEVDIPDDEDLNKELSLFELKRGRSQSLSAVPQDGETRSAFFPPNKLQTGEDRHKFAEALKRQLSQTFGDQDMTPEDHNQSSPQHLPRPRPRYQSVTRQLDTDETMSDDERMVIDESNKDEGNESDNEASDLICKEHVSDSETDSQTEEDNLIENKAFPQQRFSPVKHINPADITYRPTPIRKVPESPVKTQTRMVGNNENERLIPRPSSVGSSFQPTGAVFRAKGGPNRNMSIGSMQELKQINNSQHRIQITQHPTVKMGQMKIHNITMTTKENEQILMSSNTETILGNQNGSGGVMRKVTQKMRGKPVQHNVSMSGSNSNSIGIPVTSSNIQIVNSNQTFITNANYSMNTVASTFTTVGKPITTPVPIASKPAVTMQQGTMLKPANMPGINLQQQAILQGSQNNGTIVLQPSNQQYGMTILNPTAHSPKTSAIQTSIGGGYITTLRNIAPPQNQNQHIQQQPHTSTQSMAPQTLLTNLVLKSSQQVSAPLTVQTSQYQQQLGQTLNQGNLQPAQLQYILPSVRVAPSSGGKVQNILQMALPGTPVQQGNIQLTFTGNQSPLPQHSPSPQAAQMGKFQISSAAAGLRLTALGSQGKVYQTQQANLLSPNPHSLNSPIVLNTMGNKQQTVLTQFPTLNQSVLATPLTTVAMAQPVVSLAALQQQQQQQTLHTQQAIPTHIQIQPGTQQQIFQQPSTQQKILLTSTPKSHDTVHTVNNVTMVAGSPSPVSKTHINSPAYAYVGSIQQGSQGAVQQVLIQPQTTRSPAPSPGVSQHNIAPKPVNQQTVQSPPQSQYQGVYKTPNVNSLTTEAKGVYKTPNVNSLTTEAKGVYKTPNVNSLTTEAKGDIGYISGGNQKSHKVKATIATIPVATESLQVTTTVPAVSRMNSQAQSPRLSPIQHYNRSVPQQYGMNHKPPRPSPLVLTSEPSRPESEFKDQSYDKKEDHVQNHDVKPQRACKGKKYREMVAEGGIRKERKSSKGSTDSGEEKSPTQVKPQRDTNTTEQTDFPSPQSENEQSVETVTKSVTFSTLPSISMPAPLSTTMPTSADNKPLESPRKPKIKPPPLPAHVLQSASSIVSPSSTNSPRRVTFKKSVQDGMEKVLERVDFDRRFEQLPQFVPESADMSSPLPQSPRAIISNYKKRGRKVSSLATGELTPKDIEMYEGHSPSYKKVSSESEGTPMGTPMGTPMGTPLGTPMGTPLGTPLGTPRTPMTGTPRSAIFGDDNMFFGKNFSLETLADAAVLSKPDEYGDGLSSPRTPEYGDGLSSPRTPAFISLLLISDEYGDGLSSPRTPAFISLLLISDEYDEYGDGLSSPRTPKTPSSPGQFSSLPQATATFQAEHVSIFPSKVCLQLKIREVRQKMMAQSAAVERAATGEDSAGTNDSQGSSGSNQGGDNSGQAQSE

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF16090	DUF4819	Domain of unknown function (DUF4819)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071	Domain	High mobility group box domain	Interproscan
IPR032147	Domain	Domain of unknown function DUF4819	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR052412	Family	Cell Cycle and Developmental Transcription Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13059	HMG-BOX TRANSCRIPTION FACTOR BBX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_60425-4.9 global RNA-seq network