Gene detail

Detailed information of Bpl_scaf_60284-2.12 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_60284-2.12	DEATH DOMAIN-ASSOCIATED PROTEIN 6 DAXX	Bpl_scaf_60284	254805	269361	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_60284-2.12

ATGGCTGTTAAAGCAAAGGAGACATTTTCTAAGTTCTTGAATTTGTGTGAACCATACTTAAAAAAGGAGAAGTCTATGGATTTGGTAAAATTACTACAAAGACGATTTATTGATTGCAATGAGGAATACAAATTATCTGCAGAGTTCATAAACTTGACCGAGATCACTGGTGCCAAAATTGAAAGTGATAATAAACATATATTTGTCCATCTTCGTGATTATATATCGAAATTAAAGTTGCACCAGACAGACGACAGGAAGAGGAAAAGACAGGTTACCTCTGCTGACGATCATGATGCTCCTAATCCAAAATCTTTCAAAGGGGAGAAAACTAATATAATAGAACAGACAGATTTCAAATCAGGTACATGTGTTAAGGAACAGTGTATTACTATTGAAGACAGTGATGATGAGGAAGATACTCAAACCAATTTCGAGTTGAAATCCACGACAAAAAAGTCACAATTAAATGGAAATGCACTTGACCAGTCTGCCTCGTACAGTAAATCACAAACTAAGACAAATTTGAGTGATGCTGTCAACCATCATAGCAAATCTCGACCTCATTCGCATAAACTCAAATTATCTAAAACTACAAAATATCAGTCTCAAACACATTCAGCACCATTGATTCAAAATGTCAGCCATCACCGTAATTCCAATTTATTGTCAAGTGAGGTGAATAAGAAATCCCCTGTAAAAAGTAATGAAATTAATGATCAAGCAGATATATCGCCTGCTGTAAACAAAAAACAGCATGATAAGGACTCAGTGCGACGCGACGTTGTAACTGTTGTACTAATTGATGATGATGATGATGATGATGAACTTAAAGATGAAAATAAGGATAACATTAATCTTGAAGTTGGCGATGAAGAAAAAGATGGATATGATGCTAGTCATAGCATAAGTTTAGATACGGATCAGGTTAATATGAAAGAGGTTGAGGACATGCAAGTTGAAAATAAAGAAACTCAAGATCTAGATGAAAAAGTCATCGATCAAGATGAAAATCTTGATGAAAACGTCAAAGATCAAGAAGAAAATAAACAGAAAGATGAAAATCTTGATGAAAACGTCAAAGATCAAGAAGAAAATAAACAGAAAGATGAAAATCTTGATGAAAACGTCAAAGATCAAGAAGAAAATAAACAGAAAGATGAAAATCTTGATGAAAACGTCAAAGATCAAGAAGAAAATAAACAGAAAGATGAAAACGTCAAAGATCAAGAAGAAAATAAACAGAAAGATGAAAATCTCGAAGAAAAAGTCAATGATCAAGATGAAAATAAACAGAAAGTTGAAAATCTCGATGGAAATGTTAAAAAAGTACCAGATAAACAGAATATGGAAAATAATGATGAAAATGATTCTTTCACTTGTGAAAATCAAAATATTACAATTGACAGTTCAATTCAACAAAGCAGCATGGACATCAATAGCACTTCATCAGATGGACCAATTGATGATGCCGATAATGGAAAAACATCCAAAATATCAAGCAATGAAGACACTATAGCTACTAACAGAGATGAAGAATCTAAAAAAGATAGCTTTGAGGACGTTGAAATGGTCGATGCTACAAAATCAGATGTAACTTTACATACCAACAATGAGCACAAAATATCAGACAGAACATCAGAACCTGAAATATCAGACAGAACATCAGAACCTGAGATATCTAAGGAAGATCCAGAAACTGAGGTATCAGAGCTGAAGATATCTACTAAAGATTCAGAGCCTAAGATATGTGTGAAAGATTCAGAGGCTGAGATCTGTAAGGAAGACTCTGAACCTGAGATATCTGACAATTTGAGGAATCAGTCACATGTGAATGATAATGAAAGTGGGCTAAAACAAATTGAAAATATTGAAAAACAAACAAAGGAAAAGGACAGGGCAGAATCAACAAATATTAGAAACGATTCCTTAGAGATGGATACAGACAGTAAAGAAAAACAGCAATGGAAAGAAGACGATAAACCAGGTACTAGTTCTGAAAATAGGAGCTGTCCTGCTAATAAAGAAGATGATGAGAAATTAAAGGATGAAGGAAATTCAGAGAGAGAAAATGACGAAGAAAAAGCCAAAACTGGTTCAAAAAAACAAATAGCTCGACTGGAAAAATTATTGGAGGATCTTAGAAATAAAATTGAAGAACTCAAGGAAAAGGAACTATCTCTTGATGACATGGACGACGAATGTTCATCGTACATTATGGAAGAAAAATATCAACGAAAATTTGTTAAAGTTTGGAATAAACTTTGTGAACTTAAGCAGAAGTCTGCTGCAACAGGTCGACCTTCAGAAAGACGATTTAAATATTCAGGTACCCGTTACCCAGAAATCAACAGGAAGATTGAGAAATTTATCAACAAGAAAAAACAATTTCCTGACTATCATGATATTCATTCCATTGTAACAAGAGTCAGCCTCAGCAAAAAAATTGGCCTTGGGTCATCTGCAGTAGAACGATTAGCTAGAGAGGCGTTTCTAGATGTTGGAGAGTCACTTCAGAAAAGGAGACGACAAGATCTGATGTATACATCCGCTGGACATTTTAAATTGGGAGAAAGACCAACTGAAGATCCAGCATTGAGCGATCCAGAACTGAAGAAAAAATTATCCTCTAACAGAAAACTTTCCAGAGAAAACATGGATCAGGTATTGAACACATTTTCTGAGAAACAGTTTCATGTTATTGAGGAGGAAGTAGAAATTGTAACGGACCAATCAGATGATGGAGAGGAAGAGGAGGAGCAGAAAGACGAAGACGATGATGATGTACCAGAACTTACTACAAGTTAA

Transcript

Bpl_scaf_60284-2.12

CAATTAGGCAAAGTAACTGATTATAAGATTATTCTTGTTTATTCACAATTAAAAAAAAAAATCTGATCCGCAAAAGTGACTAATAGTAATGGTCTCAAAATCCTGGCTGAATCCCTGTATCATGTATATAGAAGTTGTAGATTTGGTAACAGAAAACAATGGCTGTTAAAGCAAAGGAGACATTTTCTAAGTTCTTGAATTTGTGTGAACCATACTTAAAAAAGGAGAAGTCTATGGATTTGGTAAAATTACTACAAAGACGATTTATTGATTGCAATGAGGAATACAAATTATCTGCAGAGTTCATAAACTTGACCGAGATCACTGGTGCCAAAATTGAAAGTGATAATAAACATATATTTGTCCATCTTCGTGATTATATATCGAAATTAAAGTTGCACCAGACAGACGACAGGAAGAGGAAAAGACAGGTTACCTCTGCTGACGATCATGATGCTCCTAATCCAAAATCTTTCAAAGGGGAGAAAACTAATATAATAGAACAGACAGATTTCAAATCAGGTACATGTGTTAAGGAACAGTGTATTACTATTGAAGACAGTGATGATGAGGAAGATACTCAAACCAATTTCGAGTTGAAATCCACGACAAAAAAGTCACAATTAAATGGAAATGCACTTGACCAGTCTGCCTCGTACAGTAAATCACAAACTAAGACAAATTTGAGTGATGCTGTCAACCATCATAGCAAATCTCGACCTCATTCGCATAAACTCAAATTATCTAAAACTACAAAATATCAGTCTCAAACACATTCAGCACCATTGATTCAAAATGTCAGCCATCACCGTAATTCCAATTTATTGTCAAGTGAGGTGAATAAGAAATCCCCTGTAAAAAGTAATGAAATTAATGATCAAGCAGATATATCGCCTGCTGTAAACAAAAAACAGCATGATAAGGACTCAGTGCGACGCGACGTTGTAACTGTTGTACTAATTGATGATGATGATGATGATGATGAACTTAAAGATGAAAATAAGGATAACATTAATCTTGAAGTTGGCGATGAAGAAAAAGATGGATATGATGCTAGTCATAGCATAAGTTTAGATACGGATCAGGTTAATATGAAAGAGGTTGAGGACATGCAAGTTGAAAATAAAGAAACTCAAGATCTAGATGAAAAAGTCATCGATCAAGATGAAAATCTTGATGAAAACGTCAAAGATCAAGAAGAAAATAAACAGAAAGATGAAAATCTTGATGAAAACGTCAAAGATCAAGAAGAAAATAAACAGAAAGATGAAAATCTTGATGAAAACGTCAAAGATCAAGAAGAAAATAAACAGAAAGATGAAAATCTTGATGAAAACGTCAAAGATCAAGAAGAAAATAAACAGAAAGATGAAAACGTCAAAGATCAAGAAGAAAATAAACAGAAAGATGAAAATCTCGAAGAAAAAGTCAATGATCAAGATGAAAATAAACAGAAAGTTGAAAATCTCGATGGAAATGTTAAAAAAGTACCAGATAAACAGAATATGGAAAATAATGATGAAAATGATTCTTTCACTTGTGAAAATCAAAATATTACAATTGACAGTTCAATTCAACAAAGCAGCATGGACATCAATAGCACTTCATCAGATGGACCAATTGATGATGCCGATAATGGAAAAACATCCAAAATATCAAGCAATGAAGACACTATAGCTACTAACAGAGATGAAGAATCTAAAAAAGATAGCTTTGAGGACGTTGAAATGGTCGATGCTACAAAATCAGATGTAACTTTACATACCAACAATGAGCACAAAATATCAGACAGAACATCAGAACCTGAAATATCAGACAGAACATCAGAACCTGAGATATCTAAGGAAGATCCAGAAACTGAGGTATCAGAGCTGAAGATATCTACTAAAGATTCAGAGCCTAAGATATGTGTGAAAGATTCAGAGGCTGAGATCTGTAAGGAAGACTCTGAACCTGAGATATCTGACAATTTGAGGAATCAGTCACATGTGAATGATAATGAAAGTGGGCTAAAACAAATTGAAAATATTGAAAAACAAACAAAGGAAAAGGACAGGGCAGAATCAACAAATATTAGAAACGATTCCTTAGAGATGGATACAGACAGTAAAGAAAAACAGCAATGGAAAGAAGACGATAAACCAGGTACTAGTTCTGAAAATAGGAGCTGTCCTGCTAATAAAGAAGATGATGAGAAATTAAAGGATGAAGGAAATTCAGAGAGAGAAAATGACGAAGAAAAAGCCAAAACTGGTTCAAAAAAACAAATAGCTCGACTGGAAAAATTATTGGAGGATCTTAGAAATAAAATTGAAGAACTCAAGGAAAAGGAACTATCTCTTGATGACATGGACGACGAATGTTCATCGTACATTATGGAAGAAAAATATCAACGAAAATTTGTTAAAGTTTGGAATAAACTTTGTGAACTTAAGCAGAAGTCTGCTGCAACAGGTCGACCTTCAGAAAGACGATTTAAATATTCAGGTACCCGTTACCCAGAAATCAACAGGAAGATTGAGAAATTTATCAACAAGAAAAAACAATTTCCTGACTATCATGATATTCATTCCATTGTAACAAGAGTCAGCCTCAGCAAAAAAATTGGCCTTGGGTCATCTGCAGTAGAACGATTAGCTAGAGAGGCGTTTCTAGATGTTGGAGAGTCACTTCAGAAAAGGAGACGACAAGATCTGATGTATACATCCGCTGGACATTTTAAATTGGGAGAAAGACCAACTGAAGATCCAGCATTGAGCGATCCAGAACTGAAGAAAAAATTATCCTCTAACAGAAAACTTTCCAGAGAAAACATGGATCAGGTATTGAACACATTTTCTGAGAAACAGTTTCATGTTATTGAGGAGGAAGTAGAAATTGTAACGGACCAATCAGATGATGGAGAGGAAGAGGAGGAGCAGAAAGACGAAGACGATGATGATGTACCAGAACTTACTACAAGTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20920	DAXX_hist_bd	Death domain-associated protein 6, histone binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038298	Homologous_superfamily	Daxx, N-terminal domain superfamily	Interproscan
IPR046378	Domain	Daxx, histone-binding domain	Interproscan
IPR046426	Homologous_superfamily	Daxx, histone-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12766	DEATH DOMAIN-ASSOCIATED PROTEIN 6 DAXX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006334	Biological Process	nucleosome assembly	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016605	Cellular Component	PML body	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0050681	Molecular Function	nuclear androgen receptor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02308	DAXX; death-associated protein 6	-	MAPK signaling pathway	ko04010	PMID: 28812709
			Apoptosis	ko04210	PMID: 28812709
			Amyotrophic lateral sclerosis (ALS)	ko05014	PMID: 28812709
			Herpes simplex infection	ko05168	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_60284-2.12 global RNA-seq network