Gene detail

Detailed information of Bpl_scaf_60249-1.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_60249-1.8	6-PHOSPHOGLUCONATE DEHYDROGENASE	Bpl_scaf_60249	128364	153899	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_60249-1.8

AAAAAGAAAACCAGTTAAATACAAAGGTAGACAACTGTGGTATTTCACAGGATTTANNNNNNNNNNCTGACAAGCCGGTAAACACTGACATACTTCCCTATCCGGTTTATTCAAATCGGTATTTATTGACAGTCATCTACAGTGATTCGTTGTGAATATGTCAGACAAGAAAGGAGATCTTGCCCTAATTGGGCTGGCTGTAATGGGACAGAATTTGATCCTGAATATGAACGATCACAAATTTACAGTTATTGTTTCTATCAGTAACGTCATAATGTTTTTTTTATGTCACTCTGACCGATAATTTTCAGTATCAAACTCTGACAGTACTTTGATATAAAACTACCATATCACACTGTGAGAACAGAGGAAAAATGTATAAATTACTGATAAAAATAATTTCTTTTTTCAGGTGCCTCTTCTTGAGAAAGGTGACATTATAATTGATGGTGGCAACTCAGAATACACAGATACAAATGTGAGTTCCTCAAATATTTTTATTTATTGATAATAAAAAAGGATTACTTTATGTAGGAAGTGGTGTTAGTGGAGGGGAAGATGGAGCTAGATATGGACCTTCATTGATGCCTGGTGGTGCACCAGAGGCATGGCCACACATTAAAGATATTTTCCAGTCTATATCAGCAAAAGTTGGAACAGAACCTTGTTGTGATTGGGTTGGACCCGATGGAGCTGGACATTTTGTAAAGATGGTACACAATGGTATAGAGTATGGAGATATGCAGTTGATCTGTGAGGCCTATCATTTGATGAAGGACGTCTTAGGAATGACACAAGATGAAATGGCAGATGTATTTGAGGATTGGAACAAAGGAGAACTAGAATCTTTCTTGATTGAGATTTCAAGAGATATTCTGAGATTTAAAGATGATGATGGAAAATATTTACTGGAGAAGATAAGAGATACTGCTGGGCAGAAAGGAACTGGAAAGTGGACTGCCATCTCAGCATTGGAATATGGTGTACCTGTCTCTTTAATAGCTGAAGCAGTGTTTGCTAGATGTTTGTCGGCAATGCAGGGAGAGAGGATTGACGCTAGTAAACAACTCAGTGGACCATCTACTACTAAATATTCAGGAGATAAAAAAGAATTTATTAATGATATCAAATATGCTTTATATGCTTCAAAAATAGTATCCTATGCCCAAGGTTTTATGTTAATGAGAGAGGCAGCTAAAGAGTTGAACTGGAAACTTAACATGGGAGGTATAGCTTTAATGTGGAGAGGTGGTTGTATTATAAGAAGCGTGTTCTTAGGAAATATTAAACAAGCATTTGACAAGAAACCAGATCTCAGCAATCTATTATTAGATGACTTCTTCAAAGGAGAAATACAGAAATGTCAGACTTCCTGGCGTAAAGTAGTAGCTACAGCTGTTACATTAGGTGTACCTACTCCTGCGTTTAGTACAGCATTAGCCTTCTTTGATGGATACAGATCAGCAAGACTGCCAGCAAATCTGTTACAGGCACAAAGAGACTACTTTGGTGCTCACACATACGAGTTACTCGACAACCCCGGCAAATTCATTCACACAAACTGGACTGGTCATGGTGGAAACGTCTCATCGACCACATACCAAGCTTAATCAAAATCATTCAAATTACAATTTAGCCAATTTACTAATTGTCTAAACAATCTTGATCTTCATAAAACAGATTGTGATAGTTTTAGATACATTTTCATCCAGTTTGTTGCTGGAAAGTGTCGTATTATATTATTATTGATAAATTTTGTTAAAAAATCATTGAGAGATATATAATAGAATTTGTTCTATATATTTTGGGGTTTTCTTTATTTTCTACATTATAATTTTTTTAAATGTTACTTTGAATTGGATCATTGTGAAGAGTTTAAAAAATTGTTAAATTTACACACAAAAAAAGGCAAAAATAATGGACATTTAGGTTGAACATCTTATTTGAGTGTCTACAGTGCTATCTGCATTAAACCAGTGTGTCTATTGCACTTCACTTTACATAAGATGGGTATCCTAGCAGATTTAATATGTCTAATAGACTTATAAGGCAAAAGTTTATCTATTTACTATATATTGTTAATAAATGCAGTGTGCAAATTGTTTTCTATTATTATACGGTTCTTGAAATAGAATTAACATATATATGTAAAACTCAGATCGACGTCCAATCCTCAAATCCATGTCCGATTTATACGTCACAGACTTCTATACCTCTGATTTATGTCCTTTTTTCAAATTGGCGTCCATTTCTTAAATCTATGTCCTTTTCCAAATTCTCAAATCTATGGCCGCTTCTCACTTTCTGAAATCGACGTCCAATGACGACACTAATGTATGCCCTAACCAATAAATCGACCATAGATCTGAGAATTTGGAAAGGACGACAATTTAAGAATAACCTTAAATCGGACCGTGATTTGGGATAATGACATCAGGAGTGGATACCGATTTGAGTCTGGACGCTGATCTGAGTCTATCATATCAAACCTAATGGGTAATCTTTTAAATAACTGACCACTAATGGGCAACTTTTTTAATAACCATTACATCACTGAAACAAACTTCTTAGAACCAACTGTATGGATAATGTGTTTAACATTCAGAAGTTTCAAACATTGGGACCATATTTGATCGATGCTATTTTCCAGGATACTCATATTATGGTGTAGACAAGCATCACTAAAATATGTATGTGTACTAATATCCATTTTGAACTTTTTCATATATTTATTCACAAAGGTATATTTCCACAAATAACACTGTAGAACTTATTTTTTTTTATATATTTATGTACAATGGAGTACTAATTGTTTTTATTTTTTTAAATGGAAAATAAATTTATTGAATTTTAAATTTATTTAGAAATAATGAAATCATTAAAACTGATCGCCTATTTCTGCATAAGGATTTCTGCCAATTTCCTTTTGACGATCATTTAACTATGGAAATTATCAATATAAAAATATTGTTTTTATGTTTTTGTCATAGAAAGAAACAATTTATCTTTCTACTACCAGTGGATTACATTATTTCTCCAATCTAGGTTGTTAAATTCTTAAATTGTAAGGCTCTCCCTAGAGTGGAGAAATATCGTAATCCATTGGTGGCAGAAGGTGGATCTGTTTCTATCCTAATTTTCATTCAAATAGAAATATACCAGATTAAGTTGAGTAATATCACACACTAGAATCTCATGAAAACAATCAGAGTATGCAATAATTACTGGTTGTTTACTAAAGATATTTATTGTTCCTATTCTTTAATTTGATTTAATTATACATTTTAGTTAGAAAATGTAATGTAATATTGTAATGTTATAAGAATATTTTTTATTTAAGACATTCTACTTGTTATCTGAACAAACTAATTTTATATGTTTCCACTAAGTACATTTTAAGAAAATAAAAATAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00393	6PGD	6-phosphogluconate dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006113	Family	6-phosphogluconate dehydrogenase, decarboxylating	Interproscan
IPR006114	Domain	6-phosphogluconate dehydrogenase, C-terminal	Interproscan
IPR006183	Family	6-phosphogluconate dehydrogenase	Interproscan
IPR006184	Binding_site	6-phosphogluconate-binding site	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR013328	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11811	6-PHOSPHOGLUCONATE DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004616	Molecular Function	phosphogluconate dehydrogenase (decarboxylating) activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006098	Biological Process	pentose-phosphate shunt	Interproscan
GO:0009051	Biological Process	pentose-phosphate shunt, oxidative branch	Interproscan
GO:0046177	Biological Process	D-gluconate catabolic process	Interproscan
GO:0050661	Molecular Function	NADP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00033	PGD, gnd, gntZ; 6-phosphogluconate dehydrogenase	EC:1.1.1.44 EC:1.1.1.343	Carbon metabolism	ko01200	PMID: 28812709
			Pentose phosphate pathway	ko00030	PMID: 28812709
			Glutathione metabolism	ko00480	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_60249-1.8 global RNA-seq network