Gene detail

Detailed information of Bpl_scaf_60149-1.31 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_60149-1.31	NECTIN-RELATED	Bpl_scaf_60149	82266	105272	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_60149-1.31

ATGACTTTGATATTTTACACATTTATTTATCGTTTAGGTAGTGCATATTGTACCAATGATGTATATATAGTGGAAGGTAGCGAAGCTGTTCTACAATGTGGATTTGAAAGTAATGAACTGGATTGGAATGTGTATAAAGGTGGTAGTTGGGATATTATAGCATCTGGTGGTGATGTTACAGATAGTTCTAAATATTCAACATCTAAGAATCCATCAACAGGACTGTATTACAGATTACATATACTGAATGTTGGTGCGTCTGATATAAAGAAGTATAGATGTGAGGGAGATGTTACTGGAGGGATTCAAAACTTCTATATACAGTTGATTCTCATAGTGAGACCATTCTCACCTGCCATTACTGGAAATACCGACAGTATAGAGGAGACAAAACCGTTGGTTGTAACCTGTACAACAACAGGTAGTCGTCCTAGAGCTACATTACAATGGACAATAGGACAGAAGGATGTTACATCTAATGCTACAGAACGGTCCAGTCATATCACAGCTAGTAATACATATACAGTGATATCTGACTTGACATACAGTTTAGGGAAGAGTAATAATGGACAGGTGTTAACATGTAAAGCTGTTAATGTGGCTGCTCCTAGTGGTGTACAGGTCACCAAAACTTTAAATATTAAATATGCACCGAGTATATCAGTATATGATGTTTCCTATGATCAAAATGAAGCCACCAGATCATTGACATGTGTCCCTGTAGGTAATCCTCAATCATATACCTACTATAAATGGCAGCACAAGTCTAAGTATGGTGAACTGATTCGTGAGTTGGATGGAGGAATTAATGGTGTATTAACATTGCCAAGTATTCCTGTAGAAGATAAATACCAGGACAGTGGTGAATATGTATGTACAGCTGGTAATGGTATTGTAGGCAGAGATGGCAGAGTAAAACAGACAGGATCTGGCTATGTCATAATAAACGCTCAACCAATATTTACAAATGACAACAGTTTAACAGAGTATGCTGAATTTGGTAAAAATGTCGATATCATTGTTTATGTATACAGTATACCTAAATATACTACACCAAGGTGGTACAAAGGTAACACATCAGTGTCATCATCAACCAAATATGTCGTGTCAGACAGAGCAGCAATAGTTAATGATACATTCCATGGTAAAGATGTACAGCTGGATGGTTACAGTGTTATGCTGACCATTAAAAATTTAAAGGAATCTGATTTCAATGTTAGTTATAGATTACAGCTGTCATATGGTGCCAGTCAAACTGTACAGTACACTGTTTTGTTAGAATCCGCAAGTCCCCCACAGACTCCCACAAATTTCACCTTAGTTAGTCATACAGACACAAGTATTGTGGTTGAGTGGATTCCTGGATATAATGGTGGACATGAACAAACTTTTAACATGCAGTACCGTATTGTTAATGAATCCACGATATGGATCACACAGGAAATTCCACAGTATAATAAGCAGACTTACATACTATCGGAATTACATGGTGACACATGGTATGAACTGAGAATGTTTGCCGAAAATAAGCTTGACAGGAGCCTTGTTACAGATATACAGAGCATAAAAACAACAATTCGGGGATCCGCATCAAGCGGTCTGTATGGAGGTGTTATTGGGGGAGTAGTTGGTGCATTCATTATTTTAGTGATCACTTTAGGAATCATATTCTACAGGAGAAAGACAGGTTTGTCAAATGGAAGAGATGAAAAAAAGTCGAACAGAACCACAGAACATTATGAGGCACTGGGTCAACAAGATAAACCTAATGTGTATGCCTGTTTCAAGAAAAAGGAAGAATCAGAAGATAAAGAATACGTCAATCTAAAATTCTAGTGTAACTTGTAATACTTATTTTCATTGGCTACTGTTTACAGTCAAATTCAATTGTCATATGTACTTTTTGAATGGCTGGAATTACTTTCGTCTGATGGGTTAAAAGAGGACATAATAAACAATACTCCGCGTGTTCTACAATTGAAGACGAAAATGCTGTAATATAATTAAAAAAACCACAAAAATACCACACCGTCAGTACATGTTACTGCTATTTCTAACTCTTCGGGGGGAGATCAGTATCAATATATCGTCAATGTGTTTGAATTAAACACTGACAATAAAATAAAATAGTAATATATTATCGAGTGAATTGTAAAAGTCCTAGTTCTACCAGTAGCTTTATTATATTATTATCAAGGAGTCAATCACAGGAAAAGTTTGAAGAAGCAAAACTCTATACAGAGAATTAGAGTTACAGCAACATGAACCACACTTAAAACCAGCAATGACCTCAGGTGCTCTGGAAGGGTACTCTACTTTTACACGCCATGAACATAATCTGATATGGACATCGTTTTTCACAATGGTATATGTATACTCTCAAAAAAAAAACAACAAAAAAACGCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF08205	C2-set_2	CD80-like C2-set immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013162	Domain	CD80-like, immunoglobulin C2-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051427	Family	Nectin and Nectin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23277	NECTIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_60149-1.31 global RNA-seq network