Gene detail

Detailed information of Bpl_scaf_60067-1.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_60067-1.11	ELONGATION FACTOR TS	Bpl_scaf_60067	116753	131101	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_60067-1.11

CCTATTCGTGTTCCGGTTAATTAAAACAGGGGAGATAAATAGTTAAAACTACAGACTCCTTCGAAGGACATTTGCAGTTTCAGATATGTTAAAGCATGCTGTAAATTGGAGTGTTTGGTTTAGTAGATGTTACAGTACAAAAGTTGACAAAAATGTTCTCAGTAAACTTAGGAAAAGAACAGGCATCTCATTCATCAACTGCAAGAAGGCCTTGATAAAATTTGACAATGATTTTGAACAGGCTGAAAAGTGGTTACAGGAAGAGGCAAAGAAAGAAGGCTGGGCTAAGGCAACCAAACTTCAGGACAGGAGCATGTCACAAGGCTTGATTGGTCTCATATCTGATAACTCGGCTGTCACTATGATAGAGGTGAATTGTGAAACAGATTTTGTAGCCAGAACAGACAAATTTAAGAATTTCGTGTCCAATCTGACATCAGTTTGTCATCAGCAGAATCAGAATGAAAATGTCAGAAAGACCATGTTACTGAAGACAGAGGCGAGTCAGATGAAGTCAGGTAGCGATGGTACTATAGCAGACATTGTTGCCATGGAGATAGGAAATATTGGAGAAAACATGCAGTTAAGAAGAACATTGTTTTTTAAAGCAACAGATGATTTTTTGCTGGGAACATACATGTATTCATCAGGAAAACCATTAAAAATCAGAAATTGTCATCTTGGAAAATTTGGTGCAGTAGTTGAGTTTAAACAGACTAAAAATGGGGAAAACCAAAAATTGACCCCTCCCAGTGTCATAGGTCATCAATTGTGTCAACACATAGTCGGTATGAACCCAAAGAGTATCGGAAGTTCCGATGAGAAACCTAATGAAAACGTCGATATGAACCCAAAGAGTATCGAAAGTTCCGATGAGAAACCTAATGAAAACAAAGAAGAAGAATCGCAATTGATATACCAAGAGCTTCTTGTCGACCCAGAAATCACGGTCGGTGAAATGCTTTCAGAAAACAATGTAACTGTTACAGACTTTGTGAGATTTGAAATCGGGGAAGAATTACCGGAAGAATCTGTAAAAAATGAAGTTGTCAAGGAAACAGCTTCTGTATTGTGATGTTAAGAAATTTAATCATAGATTGTTCACTCTGAAATCACAGTCAGTATAATATAATTTCATAAAATAATGTGACTGTTTTATTTTAGATTGGAGAGAAATACAACATTTTCATATTTCTGACTTGATTCTAAAATTATTTCTTTTATATGACTTCCTTCTCTTTAGTATGGCTAAAATAATCCTATTTCGCACAGAGCTCAATAAATATAGGGTGTTTAATGCCACTTTCAACAATATTTCAGTTATATCGTGGCGGTCTGTTTTATTGGTGGAGGAAATTGGAGTACCTGGAGAAAACCACCAACCTGTTGCAAGTCACTGACAAACTTTATCATATAATGTTGTATCGAATACACCTTGCCTGAGCGGGATTCAAACTCACAATGTTAGTGGTGATACGCACTGATTCCATAGGTAGTTGTAAATCCAACTACCATACGATCACGAACACGACAGCTTCCTCAATAAATATTAAATATATCTATTTCGTTACCATTACACTATTTAAATGTTGTAAGAAATTGTGAATTTTCTTTTTGCCATCAAATTACTACATGTATCTTCTGATTTTTTTTATAAGGTTGAAATATTTACAAATTATCAAAGAATTATAGGGGCCCGGGTGGCTCAATGAGTTAGGTCGTTGGATCTAACAACTCGTACAAACCAATACAGCATTTGTAAATTACAAAAAAGGGTGCACTCGACTCGCAGCCGCAAGTGATAAAGTTTACCAGTTCCTTGCCCATGGTCGGTGGTTCTCTTCGGGTACTCCGGCTTCCTCCACCACTAAAACTGGTCGCCATAATATAGCTGAAATATTGTTGAAAGTGGCGTTAAACGCCAAAAATCAATTCAAAGAATTATATTCAAATTCTTTTGTCCTTTTTGTTGCTCTTGCATGAAACAGGTAACGTTTTACATGGTGTAAGGGAAATAACTCCTACAGAGAAAGTATTAACATGTATAAATTTAGAGTCAAATCAGGATTGTGGAAATGGTCTACTCATTGAACTATCAATGTAAAGTGAGGGTGTAAAAGGGGGGAGGGGGGCTCTGTGATATCACAGATTATATGTACCGGTATTAAAAAAAATCTCAAAGTGAAATGTTGTACATTAAAATGATTCATTTTACAATTCAGTGGTTTTATATTACGCCCTCAACACACAACGAAAAAACATTTAAAGTCCCACAATGCATTATCTAAAATTTTGATCAGATCAATTGGGATCTATTAACCAGTTTAACCCCACCACATTTTTGTGCCTGTCCCAAACCAGGACTTGGATTTCTGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00889	EF_TS	Elongation factor TS	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001816	Family	Translation elongation factor EFTs/EF1B	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR014039	Domain	Translation elongation factor EFTs/EF1B, dimerisation	Interproscan
IPR018101	Conserved_site	Translation elongation factor Ts, conserved site	Interproscan
IPR036402	Homologous_superfamily	Elongation factor Ts, dimerisation domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11741	ELONGATION FACTOR TS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005759	Cellular Component	mitochondrial matrix	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan
GO:0070125	Biological Process	mitochondrial translational elongation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02357	tsf, TSFM; elongation factor Ts	-	Translation factors	ko03012	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_60067-1.11 global RNA-seq network