Gene detail

Detailed information of Bpl_scaf_59688-0.1 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_59688-0.1	THREONINE-TRNA LIGASE	Bpl_scaf_59688	5875	24239	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_59688-0.1

CAGATGTGGTCCATTGATAGATCTGTGTAGAGGACCACATGTTCGACATACTGGTAAAGTCAAAGCCTTTATGGTTACAAAGAATTCTGCCACTTTCTGGGAAGGTAAAGCTGATGCTGAATCTCTACAGAGAATATATGGTATTTCCTTTCCTGATACTAAACAGTTAAGTGAATGGAAACATTTCCAGGAGGAGGCTGCAAAGAGAGATCACAGAAAGGTTGGAAAGGAACAAGAATTATTTTTCTTCCATGAATGGAGTCCTGGAAGCTGTTTTTTCTTGCCAAAGGGAGCACATATTTATACCACTCTGATTGACTATATGAAGTCAGAGTATTGGAAAAGAGGATTCCAAGAAGTAGTTTCTCCAAATATCTACAACAGTAAATTGTGGGAACAGTCTGGACATTGGCAACATTATGCAGAAAACATATTTAAGTTTGAAGTTGACAAAGAAATGTTTGCTCTGAAACCAATGAATTGTCCTGGACACTGTTTGATGTTTGACCATCGTCAGAGGTCATGGAGAGAGTTACCTTTAAGACTGGCAGATTTTGGTGTATTACATAGAAATGAGTTATCTGGAGCATTAAGTGGTCTAACTAGAGTAAGACGATTCCAACAAGATGATGCACATATATTCTGTAGACCTGATCAGATAAAAGAAGAAATTTCTGGTTGTTTAGATTTCCTCAAATGTGTTTACGATACGCTTGGTTTTACCTTTGAACTCCAGTTATCTACCAGGCCTGAAAAGTTTTTAGGAGAAATTAAATTATGGGATGATGCCGAAAAGTCATTATCAGAATGTTTGGATGACTTTGGAATGAAGTGGACTTTGAACCCAGGAGATGGTGCTTTCTATGGTCCTAAAATAGATATACATATAATGGATGCTCTAAAGAGATCACATCAATGTGCTACCATACAGCTAGATTTCCAGTTGCCCATCAGATTTAATCTCAACTATAACAGTGGTGAGCAAGATGAAAAAAAGAGACCAGTGATGATTCATCGAGCTGTCCTCGGATCTGTAGAGAGAATGATTGCAGTCCTTACTGAAAGTTTCGGTGGCAAATGGCCGTTTTGGTTGTCACCAAGGCAGTGTGTCATTATACCTGTTGCCCCTGTCTATGACAGTTATGCTGAAGAGGTGAAGAAGCAGATCCATGAAGCTGGATTTCTCTGTGATACTGATGTAGACCACAGCACTACTTTAAACAAGAAGATCAGAAATGCTCAATTAGCACAATATAACTTCATATTGGTTGTTGGAGAAAAAGAAGTGGGCAATAAGACTGCTAACGTTCGTACCAGAGATAACAAAGTTCACGACGAACACAGTATAGAAAAGATTATTGAAAGATTTGCAGAATTTAAAAAATCCAAATGTATAGACTCCGAGAACTTTTAAATTATAATTTAGATTTTTGATCGTCATGTTATTTATTGATAAACACCACTTTGTAGTTGGCTTACATAATTGACAATGTTCAGTTGTTACTTTTAAAAGTGTATACACAGAGAACAAAAATTTACAGCATGGATTCTATTGTGAACTTGAGAAACTAAGCTTGTGCCAAGGCTAGTGGAATCCTAGATTTACTTTGACTACTTAAACTTGTTTGTCTTTTCATGTAACTTTTTTGTGCTTGCAAAAACTAGCATTGCCAAGGATGGAATCCTCTTACAGAAATAATGTGGACCTACCGTGTTTAAGGAAACAGATAAATAAATGAAAGACAAAAAAGAGTACCAAGAATGGAATGTGATGAAAGACGTGTAAAAAAAATTATTAAGCACAAGTTATATCTCTTGACACAGCAGAATGTAATGTTTCTAAAATATACAATGGTTTAAATGATAATAGGATTTGGTCAATGATAGTTCAACAGTAGTCATCAAATATGGAAACAAAATTTTACTTTGAATTTATCTGCACATGCTTCATAGAAAACACATCTTAATAATTAGTTGTGAAATTATTAGTATATACATATATATCTACATCTAAATCGTTTTGTCATTAAAATGATGATATTGTTGAATAAACAAAAATGTTTTCCTTTCTCTACTTAAAGTACTATTAAATAGTACTAATAGACCTGATGCACATTCCAAATTTGATTCTAAAGTTATGTGATCTTGATAAGAGTTATTTCCCTTTGAACATGCGACATGGTACCTGCAAGGACAATGGACTTACTTAGTCCTCTTCGTGCTGGAATGCACATAAGGCCATCACCAGAGACTTTCATGCCTGTCTGTCTTGGGACCAATGCTGAACTTGTCCCCATGTCCAGTCTTTTTCTTTCATCTCCTTCTCCACAGAGCATCTCCAGGTCTCCTTGGCTCTACCCCACTTCCTCTTTCCAGTTGGTGTCCATCTCAATGCAACCCTGGGGATGGAGGTTGGGTGCATTCTACACACGTGGTAAATCCATATCCATCTTCGTCTTTTTATCTCCTGAGATAGTGGGGTGGTGTTGGTCCGCTTGTACCAGCTCTTCATTTGAGATGGTATTTGGCCAGAAGATGCGGAGGCATCGAGTCTGGAAAACATCAAGCCTGGTTGTAATGGCATATGTGACTTTCCAAGATTCAGCACCATACAGGAAGACTCCAGGTACATCAACAATGAAAAAAACCAAGAATTTGAAGATGATTTTTTTTTATAATTACATGTAGTAGATATTTGGCAGATGTAAAAATCAGACGATCAATTTGTTAGCAAAGAAAAAATTTACAACATTAAAATTTTATACAGATTATGAGAAAAGCATGTCATTTTCATTAAAATTGCATGAAAATGACTTGCCCACCTTTAAAAGAAAATAACTCTCATTAAAAAATTGGGTAAAAACATATTTTTAGAAGTCTGAAATGTGCATGTGCAAATGGTCTATTATGGGTCTATTTAGTATGTAGAAGGTTGTAGTTATGTCTCTAGTAGGTACAGGCAAAAGTCCCAAATATTTGTAGTTTCTTCTTGCACTAGTTTTTACATAGTTAACAGTGGTCAAATTGTATTCTTAATACTTATATATACAATGTAGAATTGGGATTTTATATTTGTCAAATTAGGTTTCTCATGAAATGAATTTTATTTAAGACATCATGCCTCAAATTTTAATAGGAAATGCCATGCATTTCTGCAGAAAATCAAATTGTTTTAATACCCCCACAATCTATGAAATATTTCCCGGTTATTTCTACCGTTGAACACCTGTTTAAAAATATATTTTGTAAAAATATAATGGAATCTATTTTAGCATTAATGTTATAAATACTTCTTTAGTTTTGATTTTTAAGCAAGAAATTTGTCTTGTTATAAAAAGCATCCATCATGATATTTGTATCGCCATGACTTAAAATTTACCACATGTATTGGAAGGAATAAGCAATTCTGAGATTTTACCCGGTTAATGAATCATAATATATTCATAAATTACCAATTCATTATGACTTGTTCATTGTATGGTAGGATAGGATTCAAGCTGTGTTAGTGTCTTGCTGACCAAAAGTTGCATACAAAATTCAGATTTATTTATAAACACTCTTTTTGGGCTCGATTATTCGTTCTGTTGGTAATATTGCAAGTTACCACTTTTGATTCAAGATTATGTTCTTTGTTTGTCATTTTGTTTATTTTGCAATGTATCAATTGTCTGTTCTTTTATTTAAGAGTAAATAAGTAAAGTAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00587	tRNA-synt_2b	tRNA synthetase class II core domain (G, H, P, S and T)	Domain	Interproscan
PF03129	HGTP_anticodon	Anticodon binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002314	Domain	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)	Interproscan
IPR002320	Family	Threonine-tRNA ligase, class IIa	Interproscan
IPR004154	Domain	Anticodon-binding	Interproscan
IPR006195	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR018163	Homologous_superfamily	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	Interproscan
IPR033728	Domain	Threonine-tRNA ligase catalytic core domain	Interproscan
IPR036621	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR045864	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR047246	Domain	Threonine-tRNA ligase, class IIa, anticodon-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11451	THREONINE-TRNA LIGASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004829	Molecular Function	threonine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006435	Biological Process	threonyl-tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01868	TARS, thrS; threonyl-tRNA synthetase	EC:6.1.1.3	Aminoacyl-tRNA biosynthesis	ko00970	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_59688-0.1 global RNA-seq network