Gene detail

Detailed information of Bpl_scaf_59648-12.37 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_59648-12.37	HEAT SHOCK PROTEIN 90 FAMILY MEMBER	Bpl_scaf_59648	1159167	1185769	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_59648-12.37

GATGGATTTATTCAGCAAATTTTGAAAACCAATCGTAGACGGCCAAGTTTAGAGAAGTCGGTCTTTACTTGTGATGATTTGATTGGTTATTTACAAGGTCGTGGTGAAAGTTGATTGGCTCATTGTACCAAAAGGGAATCCCAAGAACAACACTGGACAGACGAGAGACGAAATTTTCACATGTTTTAAGCTGAAATCTGACAAATAATTTTCCTGTGTCATAGTTAAGGGACATTATCGAAAAAATGAAGTGGAAGACGTTCTACTTAGGTCTACTTGGAGTACTTTTTATGAGTGGATTCTGTTTAGCTGATAATGATGACTCTGCCACCATTGAAGAGGACATTGGAAAGAGTAGAGAAGGATCAAAGACTGATGATGAAGTTGTTCAAAGAGAGGAAGAAGCGATCAAGTTAGATGGATTAAATGTGGCTCAGATGAAGGAACTAAGAGATAAGGCAGAAAAACATGTGTTCCAGGCAGAAGCTGACAAAGACAACCACATCTTACATGTGATTGATACAGGAATTGGTATGACTAAAAATGATCTGGTCAGCAACTTGGGAACCATTGCTAAATCTGGTACCAGTGAATTCTTGTCGAAATTAGGAGATGCCAGCTCACCGACAGAAATGACTGATCTGATTGGACAGTTTGGTGTTGGTTTCTATTCATCATTCTTGGTGTCTGACAGAATTATTGTAACATCAAAACATAACGATGATGAACAACATGTATGGGAGTCTGATTCACATCTGCATTTGAAAGAAGAAGCTCATGATTTCTTAGAAGAGAATACTCTTAAAGATCTGATCAAAAAATACAGTCAGTTTATCAACTTTAACATTTATATCTGGTCAAGCAAGACAGAAGAAGTTGAGGAACCATTAGATGAAGAAGAAACAAAAGATGAACCAGAAAAGAAAGATGATGAAGATAAAGATGAAGATGATGATGCTCAGGTAGAGGAAGAAAAAGAAGAAGAAAAACCAAAGACAAAGAAAGTTTCTAAAACAGTGTGGGATTGGGAACTAATGAATAGTGTTAAACCTATCTGGACTAGAAACAAAGACCATGATGAACCATTGGCCAAAGTTCATTTTACTGCTGAAGGAGAAGTTACATTTAAATCTATTTTGTATGTTCCAAAAACATCACCAAACGATATGTTCCAGAATTATGGCAAAAATATTGACCATATTAAGATGTATGTAAGAAGGGTGTTTATAACAGATAATTTTGAAGATATGATGCCAAAGTATTTGTCATTTGTTAGGGGCATGGTTGATTCTGATGATTTACCTCTCAATGTATCCAGAGAAACTCTACAACAACACAAATTATTGAAGGTTATCAAGAAAAAATTAGTTAGAAAGACCCTAGATATGATTAAAAAGATTGGAAAAGAAGATTATGATAAGTTCTGGAAAGAATTCAGTACAAAAATGAAGGAGAAACAAGAATCCATTTTCTTTGTTGCTGGTTCAAGTCGGGAAGAGGTTGAAAAGTCACCATTTGTTGAAAAACTTTTGAAAAAAGGATTTGAAGTTCTTTACTTGACTGAACCTGTTGATGAATACTGTATACAAGCTTTACCAGAATATGAAAGCAAAAAATTCCAAAATGTCGCCAAAGAAGGCGTTAAACTTGATGATTCTGAAAAAGCCAAAGAGAGGAAAGAAGCTACAGAAAAAGAATATGAACCATTGATGAAATGGCTGAAAGAAGATGCATTGAAAGATAAAATAGAAAAAGCTACAGTCTCTGAACGTCTAACCACCTCACCATGTGCTCTGGTTGCCAGTAGTTACGGTTGGTCTGGCAACATGGAAAGAATAATGAAAGCCCAAGCCTATGCAAAATCACAGGATGCTTCTCAAAGTTTCTACTCCAGTCAGAAAAAGACTTTAGAAATAAATACAAGACATCCATTGATTAAAGAATTAAAATCTAAAATTGAAACCAATGCCGAAGATCAAACTGCTAAAGATTTAGCCGTTGTTATGTTTGAAACAGCTACATTAAGATCAGGATATTCTTTGCAAGATACATCAGGATTTGCTGATAGAGTGGAAAGAATGTTGAGACTTTCAATGGATGTTCCATTAGATGCAAAGATTGAGGAAGAACCAGAAGAAGAAGAAGTTGCAGCAGATCAAGATGAGGAAGAGGTTAATGATGAAGATACAGATGACAAGGGATTAAAAGTGTTGTCATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00183	HSP90	Hsp90 protein	Family	Interproscan
PF13589	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001404	Family	Heat shock protein Hsp90 family	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR020575	Domain	Heat shock protein Hsp90, N-terminal	Interproscan
IPR036890	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR037196	Homologous_superfamily	HSP90, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11528	HEAT SHOCK PROTEIN 90 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0048471	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09487	HSP90B, TRA1; heat shock protein 90kDa beta	-	Protein processing in endoplasmic reticulum	ko04141	PMID: 28812709
			PI3K-Akt signaling pathway	ko04151	PMID: 28812709
			IL-17 signaling pathway	ko04657	PMID: 28812709
			Estrogen signaling pathway	ko04915	PMID: 28812709
			Thyroid hormone synthesis	ko04918	PMID: 28812709
			Plant-pathogen interaction	ko04626	PMID: 28812709
			Pathways in cancer	ko05200	PMID: 28812709
			Prostate cancer	ko05215	PMID: 28812709
			Fluid shear stress and atherosclerosis	ko05418	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_59648-12.37 global RNA-seq network