| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_5959-2.6 | TRANSCRIPTION INITIATION FACTOR TFIID | Bpl_scaf_5959 | 238252 | 260257 | + |
| CDS | |||||
| Bpl_scaf_5959-2.6 | |||||
| Transcript |
| Bpl_scaf_5959-2.6 |
| Protein |
| Bpl_scaf_5959-2.6 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF04494 | TFIID_NTD2 | WD40 associated region in TFIID subunit, NTD2 domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR006594 | Conserved_site | LIS1 homology motif | Interproscan |
| IPR007582 | Domain | TFIID subunit TAF5, NTD2 domain | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR019775 | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR020472 | Repeat | G-protein beta WD-40 repeat | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR037264 | Homologous_superfamily | TFIID subunit TAF5, NTD2 domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19879 | TRANSCRIPTION INITIATION FACTOR TFIID | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005669 | Cellular Component | transcription factor TFIID complex | Interproscan |
| GO:0006367 | Biological Process | transcription initiation at RNA polymerase II promoter | Interproscan |
| GO:0016251 | Molecular Function | RNA polymerase II general transcription initiation factor activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K03130 | TAF5; transcription initiation factor TFIID subunit 5 | - | Basal transcription factors | ko03022 | PMID: 28812709 |
| Herpes simplex infection | ko05168 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_5959-2.6 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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