Detailed information of Bpl_scaf_59505-1.23 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_59505-1.23THROMBOSPONDINBpl_scaf_59505135916178020+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00754F5_F8_type_CF5/8 type C domainDomainInterproscan
PF02412TSP_3Thrombospondin type 3 repeatDomainInterproscan
PF05735TSP_CThrombospondin C-terminal regionFamilyInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF07699Ephrin_rec_likeTyrosine-protein kinase ephrin type A/B receptor-like DomainInterproscan
PF13385Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000421DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR003367RepeatThrombospondin, type 3-like repeatInterproscan
IPR006558DomainLamG-like jellyroll foldInterproscan
IPR008859DomainThrombospondin, C-terminalInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR011641DomainTyrosine-protein kinase ephrin type A/B receptor-likeInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR028974Homologous_superfamilyTSP type-3 repeatInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10199THROMBOSPONDINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04659THBS2S; thrombospondin 2/3/4/5-PI3K-Akt signaling pathway ko04151PMID: 28812709
ECM-receptor interaction ko04512PMID: 28812709
Phagosome ko04145PMID: 28812709
Focal adhesion ko04510PMID: 28812709
Human papillomavirus infection ko05165PMID: 28812709
Malaria ko05144PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_59505-1.23 global RNA-seq network
TOP